Protein : Qrob_P0250340.2 Q. robur
Protein Identifier  ? Qrob_P0250340.2 Organism . Name  Quercus robur
Score  86.2 Score Type  egn
Protein Description  (M=2) 2.5.1.55 - 3-deoxy-8-phosphooctulonate synthase. Code Enzyme  EC:2.5.1.55
Gene Prediction Quality  validated Protein length 

Sequence

Length: 260  
Kegg Orthology  K01627
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0008676 3-deoxy-8-phosphooctulonate synthase activity Catalysis of the reaction: D-arabinose 5-phosphate + H(2)O + phosphoenolpyruvate = 8-phospho-3-deoxy-D-manno-oct-2-ulosonate + 2 H(+) + phosphate.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_008G049000g 3 245 + 243 none 84.08 289 93.42 2e-170 hypothetical protein
blastp_kegg lcl|cit:102607815 2 245 + 244 none 84.14 290 92.62 4e-169 2-dehydro-3-deoxyphosphooctonate aldolase-like
blastp_kegg lcl|cic:CICLE_v10005458mg 2 245 + 244 none 76.73 318 92.62 7e-169 hypothetical protein
blastp_kegg lcl|fve:101301235 3 245 + 243 none 83.79 290 93.83 1e-168 2-dehydro-3-deoxyphosphooctonate aldolase 1-like
blastp_kegg lcl|gmx:100810842 3 245 + 243 none 83.51 291 92.59 4e-168 2-dehydro-3-deoxyphosphooctonate aldolase-like
blastp_kegg lcl|tcc:TCM_026967 2 245 + 244 none 84.14 290 92.21 9e-168 Aldolase-type TIM barrel family protein isoform 1
blastp_kegg lcl|gmx:100809120 3 245 + 243 none 83.51 291 92.18 1e-167 2-dehydro-3-deoxyphosphooctonate aldolase-like
blastp_kegg lcl|ath:AT1G79500 2 245 + 244 none 84.14 290 92.21 2e-167 AtkdsA1 2-dehydro-3-deoxyphosphooctonate aldolase 1
blastp_kegg lcl|eus:EUTSA_v10018956mg 2 245 + 244 none 84.14 290 91.80 2e-167 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_677511 2 245 + 244 none 84.14 290 91.80 8e-167 hypothetical protein
blastp_pdb 2nxh_L 4 257 + 254 Gaps:12 92.78 263 52.87 1e-78 mol:protein length:263 2-dehydro-3-deoxyphosphooctonate aldolase
blastp_pdb 2nxh_K 4 257 + 254 Gaps:12 92.78 263 52.87 1e-78 mol:protein length:263 2-dehydro-3-deoxyphosphooctonate aldolase
blastp_pdb 2nxh_J 4 257 + 254 Gaps:12 92.78 263 52.87 1e-78 mol:protein length:263 2-dehydro-3-deoxyphosphooctonate aldolase
blastp_pdb 2nxh_I 4 257 + 254 Gaps:12 92.78 263 52.87 1e-78 mol:protein length:263 2-dehydro-3-deoxyphosphooctonate aldolase
blastp_pdb 2nxh_H 4 257 + 254 Gaps:12 92.78 263 52.87 1e-78 mol:protein length:263 2-dehydro-3-deoxyphosphooctonate aldolase
blastp_pdb 2nxh_G 4 257 + 254 Gaps:12 92.78 263 52.87 1e-78 mol:protein length:263 2-dehydro-3-deoxyphosphooctonate aldolase
blastp_pdb 2nxh_F 4 257 + 254 Gaps:12 92.78 263 52.87 1e-78 mol:protein length:263 2-dehydro-3-deoxyphosphooctonate aldolase
blastp_pdb 2nxh_E 4 257 + 254 Gaps:12 92.78 263 52.87 1e-78 mol:protein length:263 2-dehydro-3-deoxyphosphooctonate aldolase
blastp_pdb 2nxh_D 4 257 + 254 Gaps:12 92.78 263 52.87 1e-78 mol:protein length:263 2-dehydro-3-deoxyphosphooctonate aldolase
blastp_pdb 2nxh_C 4 257 + 254 Gaps:12 92.78 263 52.87 1e-78 mol:protein length:263 2-dehydro-3-deoxyphosphooctonate aldolase
blastp_uniprot_sprot sp|Q9AV97|KDSA1_ARATH 2 245 + 244 none 84.14 290 92.21 7e-169 2-dehydro-3-deoxyphosphooctonate aldolase 1 OS Arabidopsis thaliana GN KDSA1 PE 1 SV 2
blastp_uniprot_sprot sp|O50044|KDSA_PEA 2 245 + 244 none 84.14 290 91.80 1e-168 2-dehydro-3-deoxyphosphooctonate aldolase OS Pisum sativum GN KDSA PE 2 SV 1
blastp_uniprot_sprot sp|Q6NQL4|KDSA2_ARATH 3 245 + 243 none 83.51 291 88.48 4e-162 2-dehydro-3-deoxyphosphooctonate aldolase 2 OS Arabidopsis thaliana GN KDSA2 PE 2 SV 1
blastp_uniprot_sprot sp|B5EPM6|KDSA_ACIF5 5 245 + 241 Gaps:5 83.99 281 55.08 3e-88 2-dehydro-3-deoxyphosphooctonate aldolase OS Acidithiobacillus ferrooxidans (strain ATCC 53993) GN kdsA PE 3 SV 1
blastp_uniprot_sprot sp|B7J6R3|KDSA_ACIF2 5 245 + 241 Gaps:5 83.99 281 55.08 3e-88 2-dehydro-3-deoxyphosphooctonate aldolase OS Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN kdsA PE 3 SV 1
blastp_uniprot_sprot sp|Q8RE91|KDSA_FUSNN 6 243 + 238 Gaps:5 83.81 278 54.51 8e-86 2-dehydro-3-deoxyphosphooctonate aldolase OS Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN kdsA PE 3 SV 2
blastp_uniprot_sprot sp|Q1IKD0|KDSA_KORVE 6 241 + 236 Gaps:3 83.81 278 56.65 8e-86 2-dehydro-3-deoxyphosphooctonate aldolase OS Koribacter versatilis (strain Ellin345) GN kdsA PE 3 SV 1
blastp_uniprot_sprot sp|B8GQ74|KDSA_THISH 5 245 + 241 Gaps:5 84.29 280 54.24 2e-85 2-dehydro-3-deoxyphosphooctonate aldolase OS Thioalkalivibrio sp. (strain HL-EbGR7) GN kdsA PE 3 SV 1
blastp_uniprot_sprot sp|C6E0M6|KDSA_GEOSM 5 244 + 240 Gaps:5 86.08 273 54.47 3e-85 2-dehydro-3-deoxyphosphooctonate aldolase OS Geobacter sp. (strain M21) GN kdsA PE 3 SV 1
blastp_uniprot_sprot sp|B8HXG7|KDSA_CYAP4 5 256 + 252 Gaps:10 88.64 273 51.65 6e-84 2-dehydro-3-deoxyphosphooctonate aldolase OS Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN kdsA PE 3 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 4 245 242 SSF51569 none none none
Gene3D 4 245 242 G3DSA:3.20.20.70 none none IPR013785
Pfam 3 245 243 PF00793 "KEGG:00540+2.5.1.55","MetaCyc:PWY-1269","MetaCyc:PWY-5111","UniPathway:UPA00030","UniPathway:UPA00357" DAHP synthetase I family IPR006218
PANTHER 5 245 241 PTHR21057:SF2 "KEGG:00540+2.5.1.55","MetaCyc:PWY-1269","MetaCyc:PWY-5111","UniPathway:UPA00030","UniPathway:UPA00357";signature_desc=2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE none IPR006269
PANTHER 5 245 241 PTHR21057 none none none
TIGRFAM 5 246 242 TIGR01362 "KEGG:00540+2.5.1.55","MetaCyc:PWY-1269","MetaCyc:PWY-5111","UniPathway:UPA00030","UniPathway:UPA00357" KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase IPR006269

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting