Protein : Qrob_P0243840.2 Q. robur
Protein Identifier  ? Qrob_P0243840.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=6) K00162 - pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Code Enzyme  EC:1.2.4.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 355  
Kegg Orthology  K00162
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2.
GO:0006086 acetyl-CoA biosynthetic process from pyruvate The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0003s16480g 1 352 + 352 Gaps:4 95.44 373 90.45 0.0 POPTRDRAFT_414358 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa007259mg 1 352 + 352 Gaps:7 95.48 376 89.14 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s13350g 1 352 + 352 Gaps:5 96.93 358 92.80 0.0 POPTRDRAFT_829373 pyruvate dehydrogenase family protein
blastp_kegg lcl|pmum:103322229 1 352 + 352 Gaps:7 95.48 376 88.86 0.0 pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial
blastp_kegg lcl|mdm:103452189 1 352 + 352 Gaps:4 95.44 373 89.04 0.0 pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial
blastp_kegg lcl|cmo:103498877 1 352 + 352 Gaps:3 95.43 372 89.58 0.0 pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial
blastp_kegg lcl|pxb:103929038 1 352 + 352 Gaps:4 95.44 373 88.76 0.0 pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial
blastp_kegg lcl|rcu:RCOM_1437610 1 352 + 352 Gaps:3 95.38 368 90.88 0.0 pyruvate dehydrogenase putative (EC:1.2.4.1)
blastp_kegg lcl|cit:102608638 1 352 + 352 Gaps:1 95.41 370 89.80 0.0 pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial-like
blastp_kegg lcl|cam:101502417 1 352 + 352 Gaps:9 95.28 360 92.13 0.0 pyruvate dehydrogenase E1 component subunit beta mitochondrial-like
blastp_pdb 3exi_B 35 353 + 319 Gaps:1 97.26 329 61.56 2e-147 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exh_H 35 353 + 319 Gaps:1 97.26 329 61.56 2e-147 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exh_F 35 353 + 319 Gaps:1 97.26 329 61.56 2e-147 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exh_D 35 353 + 319 Gaps:1 97.26 329 61.56 2e-147 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exh_B 35 353 + 319 Gaps:1 97.26 329 61.56 2e-147 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_6 35 353 + 319 Gaps:1 97.26 329 61.56 2e-147 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_4 35 353 + 319 Gaps:1 97.26 329 61.56 2e-147 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_2 35 353 + 319 Gaps:1 97.26 329 61.56 2e-147 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_Z 35 353 + 319 Gaps:1 97.26 329 61.56 2e-147 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_pdb 3exg_X 35 353 + 319 Gaps:1 97.26 329 61.56 2e-147 mol:protein length:329 Pyruvate dehydrogenase E1 component subunit b
blastp_uniprot_sprot sp|Q38799|ODPB1_ARATH 1 352 + 352 none 96.97 363 84.38 0.0 Pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial OS Arabidopsis thaliana GN PDH2 PE 1 SV 2
blastp_uniprot_sprot sp|Q6Z1G7|ODPB1_ORYSJ 1 352 + 352 Gaps:5 95.45 374 84.59 0.0 Pyruvate dehydrogenase E1 component subunit beta-1 mitochondrial OS Oryza sativa subsp. japonica GN Os08g0536000 PE 2 SV 1
blastp_uniprot_sprot sp|Q0J0H4|ODPB2_ORYSJ 1 352 + 352 Gaps:7 95.48 376 84.40 0.0 Pyruvate dehydrogenase E1 component subunit beta-2 mitochondrial OS Oryza sativa subsp. japonica GN Os09g0509200 PE 2 SV 1
blastp_uniprot_sprot sp|P52904|ODPB_PEA 1 352 + 352 Gaps:10 95.26 359 86.26 0.0 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Pisum sativum PE 1 SV 1
blastp_uniprot_sprot sp|Q86HX0|ODPB_DICDI 27 352 + 326 Gaps:2 91.01 356 65.74 1e-159 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Dictyostelium discoideum GN pdhB PE 1 SV 1
blastp_uniprot_sprot sp|P32473|ODPB_YEAST 15 352 + 338 Gaps:5 92.08 366 64.09 7e-152 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PDB1 PE 1 SV 2
blastp_uniprot_sprot sp|Q09171|ODPB_SCHPO 9 347 + 339 Gaps:2 93.17 366 61.58 2e-149 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN pdb1 PE 4 SV 1
blastp_uniprot_sprot sp|Q9D051|ODPB_MOUSE 17 353 + 337 Gaps:3 94.71 359 60.88 3e-149 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Mus musculus GN Pdhb PE 1 SV 1
blastp_uniprot_sprot sp|P11966|ODPB_BOVIN 14 352 + 339 Gaps:6 93.31 359 62.09 3e-149 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Bos taurus GN PDHB PE 1 SV 2
blastp_uniprot_sprot sp|P49432|ODPB_RAT 17 353 + 337 Gaps:3 94.71 359 60.29 2e-148 Pyruvate dehydrogenase E1 component subunit beta mitochondrial OS Rattus norvegicus GN Pdhb PE 1 SV 2

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 34 351 318 PTHR11624:SF56 "KEGG:00010+1.2.4.1","KEGG:00020+1.2.4.1","KEGG:00620+1.2.4.1";signature_desc=PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA, MITOCHONDRIAL (PTHR11624:SF56) none IPR027110
PANTHER 34 351 318 PTHR11624 none none none
SUPERFAMILY 34 239 206 SSF52518 none none IPR029061
Pfam 35 210 176 PF02779 none Transketolase, pyrimidine binding domain IPR005475
SUPERFAMILY 224 352 129 SSF52922 none none IPR009014
Pfam 229 350 122 PF02780 none Transketolase, C-terminal domain IPR005476
Gene3D 230 352 123 G3DSA:3.40.50.920 none none IPR009014
Gene3D 34 229 196 G3DSA:3.40.50.970 none none IPR029061
SMART 36 211 176 SM00861 none Transketolase, pyrimidine binding domain IPR005475

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 29   Mitochondrion 2 0.018 0.906 NON-PLANT 29