Protein : Qrob_P0242420.2 Q. robur
Protein Identifier  ? Qrob_P0242420.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=7) PTHR10169:SF38 - DNA TOPOISOMERASE 2 (PTHR10169:SF38) Code Enzyme  EC:5.99.1.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 138  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_042757 1 136 + 136 Gaps:2 9.10 1473 76.87 4e-58 DNA topoisomerase 2 isoform 1
blastp_kegg lcl|pmum:103330635 1 135 + 135 Gaps:1 9.11 1471 75.37 1e-52 DNA topoisomerase 2
blastp_kegg lcl|pper:PRUPE_ppa000202mg 1 135 + 135 Gaps:1 9.11 1471 75.37 2e-52 hypothetical protein
blastp_kegg lcl|cmo:103500322 1 136 + 136 Gaps:3 8.93 1490 72.18 6e-52 DNA topoisomerase 2
blastp_kegg lcl|csv:101215950 1 136 + 136 Gaps:3 9.12 1459 72.18 8e-52 DNA topoisomerase 2-like
blastp_kegg lcl|mdm:103438420 8 136 + 129 Gaps:1 8.76 1462 71.88 3e-51 DNA topoisomerase 2-like
blastp_kegg lcl|mdm:103409964 8 136 + 129 Gaps:1 8.92 1435 71.88 3e-51 DNA topoisomerase 2-like
blastp_kegg lcl|vvi:100253371 10 136 + 127 Gaps:1 8.46 1489 73.02 3e-51 DNA topoisomerase 2-like
blastp_kegg lcl|pxb:103945915 10 136 + 127 Gaps:1 8.59 1467 69.84 8e-49 DNA topoisomerase 2-like
blastp_kegg lcl|pxb:103945911 10 136 + 127 Gaps:1 8.59 1467 69.84 8e-49 DNA topoisomerase 2-like
blastp_pdb 3qx3_B 2 136 + 135 Gaps:2 16.56 803 37.59 3e-20 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 3qx3_A 2 136 + 135 Gaps:2 16.56 803 37.59 3e-20 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 2rgr_A 2 131 + 130 Gaps:14 18.97 759 30.56 3e-10 mol:protein length:759 DNA topoisomerase 2
blastp_pdb 3l4k_A 2 131 + 130 Gaps:14 19.02 757 30.56 3e-10 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 3l4j_A 2 131 + 130 Gaps:14 19.02 757 30.56 3e-10 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 1bjt_A 2 131 + 130 Gaps:14 18.16 793 30.56 4e-10 mol:protein length:793 TOPOISOMERASE II
blastp_pdb 1bgw_A 2 131 + 130 Gaps:14 18.16 793 30.56 4e-10 mol:protein length:793 TOPOISOMERASE
blastp_uniprot_sprot sp|P30182|TOP2_ARATH 1 136 + 136 Gaps:3 9.44 1473 56.12 4e-40 DNA topoisomerase 2 OS Arabidopsis thaliana GN TOP2 PE 2 SV 2
blastp_uniprot_sprot sp|O24308|TOP2_PEA 3 136 + 134 Gaps:5 9.51 1462 49.64 7e-29 DNA topoisomerase 2 OS Pisum sativum GN TOP2 PE 2 SV 1
blastp_uniprot_sprot sp|P08096|TOP2_SCHPO 5 131 + 127 Gaps:10 8.28 1485 43.09 1e-19 DNA topoisomerase 2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN top2 PE 1 SV 2
blastp_uniprot_sprot sp|Q02880|TOP2B_HUMAN 2 136 + 135 Gaps:2 8.18 1626 37.59 2e-19 DNA topoisomerase 2-beta OS Homo sapiens GN TOP2B PE 1 SV 3
blastp_uniprot_sprot sp|Q64399|TOP2B_CRILO 2 136 + 135 Gaps:2 8.25 1612 36.84 4e-18 DNA topoisomerase 2-beta OS Cricetulus longicaudatus GN TOP2B PE 2 SV 1
blastp_uniprot_sprot sp|Q64511|TOP2B_MOUSE 2 136 + 135 Gaps:2 8.25 1612 36.84 5e-18 DNA topoisomerase 2-beta OS Mus musculus GN Top2b PE 1 SV 2
blastp_uniprot_sprot sp|Q55BP5|TOP2_DICDI 2 136 + 135 Gaps:18 9.40 1521 36.36 2e-14 Probable DNA topoisomerase 2 OS Dictyostelium discoideum GN top2 PE 3 SV 1
blastp_uniprot_sprot sp|O42130|TOP2A_CHICK 2 136 + 135 Gaps:8 8.18 1553 33.86 3e-13 DNA topoisomerase 2-alpha OS Gallus gallus GN TOP2A PE 2 SV 2
blastp_uniprot_sprot sp|O42131|TOP2B_CHICK 2 136 + 135 Gaps:2 8.17 1627 33.83 5e-13 DNA topoisomerase 2-beta OS Gallus gallus GN TOP2B PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y8G8|TOP2_PENCH 2 129 + 128 Gaps:5 7.75 1587 36.59 7e-13 DNA topoisomerase 2 OS Penicillium chrysogenum GN TOP2 PE 3 SV 1
rpsblast_cdd gnl|CDD|178775 1 137 + 137 Gaps:1 9.28 1465 70.59 3e-51 PLN03237 PLN03237 DNA topoisomerase 2 Provisional.
rpsblast_cdd gnl|CDD|178674 1 136 + 136 Gaps:5 11.54 1135 54.20 1e-37 PLN03128 PLN03128 DNA topoisomerase 2 Provisional.
rpsblast_cdd gnl|CDD|185451 1 136 + 136 Gaps:1 9.87 1388 38.69 1e-26 PTZ00108 PTZ00108 DNA topoisomerase 2-like protein Provisional.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 98 119 22 Coil none none none
PANTHER 2 136 135 PTHR10169:SF38 none none none
Gene3D 2 136 135 G3DSA:1.10.268.10 none none IPR013757
PANTHER 2 136 135 PTHR10169 none none none
SUPERFAMILY 2 133 132 SSF56719 none none IPR013760
Pfam 3 129 127 PF00521 none DNA gyrase/topoisomerase IV, subunit A IPR002205

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting