Protein : Qrob_P0235620.2 Q. robur
Protein Identifier  ? Qrob_P0235620.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR13068//PTHR13068:SF10 - CGI-12 PROTEIN-RELATED // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 495  
Kegg Orthology  K15032
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0005739 mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_035780 1 480 + 480 Gaps:8 99.79 475 77.22 0.0 Mitochondrial transcription termination factor family protein isoform 1
blastp_kegg lcl|cic:CICLE_v10011572mg 28 479 + 452 Gaps:2 92.28 492 77.97 0.0 hypothetical protein
blastp_kegg lcl|cit:102620729 28 479 + 452 Gaps:2 92.28 492 77.97 0.0 uncharacterized LOC102620729
blastp_kegg lcl|pop:POPTR_0017s10070g 1 489 + 489 Gaps:18 99.18 487 75.36 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1678510 53 480 + 428 none 98.17 436 81.31 0.0 hypothetical protein
blastp_kegg lcl|pmum:103330366 1 449 + 449 Gaps:7 99.77 443 78.96 0.0 uncharacterized LOC103330366
blastp_kegg lcl|pper:PRUPE_ppa014677mg 49 487 + 439 none 98.21 447 79.95 0.0 hypothetical protein
blastp_kegg lcl|pxb:103959650 1 487 + 487 Gaps:9 98.77 488 75.31 0.0 uncharacterized LOC103959650
blastp_kegg lcl|gmx:100781900 1 476 + 476 Gaps:17 99.38 480 73.38 0.0 uncharacterized LOC100781900
blastp_kegg lcl|pxb:103960913 1 452 + 452 Gaps:9 90.49 494 76.73 0.0 uncharacterized LOC103960913
blastp_uniprot_sprot sp|Q49AM1|MTER3_HUMAN 201 452 + 252 Gaps:30 68.05 385 26.34 8e-06 mTERF domain-containing protein 3 mitochondrial OS Homo sapiens GN MTERFD3 PE 1 SV 2
rpsblast_cdd gnl|CDD|178738 194 467 + 274 Gaps:18 71.05 487 37.28 2e-34 PLN03196 PLN03196 MOC1-like protein Provisional.
rpsblast_cdd gnl|CDD|202273 171 467 + 297 Gaps:61 98.26 345 40.12 2e-29 pfam02536 mTERF mTERF. This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers.
rpsblast_kog gnl|CDD|36481 47 481 + 435 Gaps:76 83.05 413 46.65 4e-23 KOG1267 KOG1267 KOG1267 Mitochondrial transcription termination factor mTERF [Transcription General function prediction only].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 319 350 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 388 419 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 284 314 31 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 248 279 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 176 207 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 352 383 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 420 451 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 212 243 32 SM00733 none Mitochondrial termination factor repeats IPR003690
Pfam 194 373 180 PF02536 none mTERF IPR003690
Pfam 371 466 96 PF02536 none mTERF IPR003690
PANTHER 193 469 277 PTHR13068:SF10 none none none
PANTHER 193 469 277 PTHR13068 none none none

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 20 19

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 11   Mitochondrion 2 0.036 0.799 NON-PLANT 11