Protein : Qrob_P0235460.2 Q. robur

Protein Identifier  ? Qrob_P0235460.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) 5.1.3.1 - Ribulose-phosphate 3-epimerase. Code Enzyme  EC:5.1.3.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 227  
Kegg Orthology  K01783

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule.
GO:0004750 ribulose-phosphate 3-epimerase activity Catalysis of the reaction: D-ribulose 5-phosphate = D-xylulose 5-phosphate.
GO:0006098 pentose-phosphate shunt The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s34010g 1 226 + 226 none 100.00 226 88.94 2e-147 POPTRDRAFT_815572 ribulose-phosphate 3-epimerase family protein
blastp_kegg lcl|mdm:103442148 1 226 + 226 none 100.00 226 88.50 5e-146 ribulose-phosphate 3-epimerase cytoplasmic isoform
blastp_kegg lcl|vvi:100242409 5 223 + 219 none 98.65 222 91.32 7e-146 ribulose-phosphate 3-epimerase cytoplasmic isoform-like
blastp_kegg lcl|pxb:103960899 1 226 + 226 none 100.00 226 87.61 2e-145 ribulose-phosphate 3-epimerase cytoplasmic isoform
blastp_kegg lcl|mus:103971533 1 226 + 226 none 100.00 226 87.17 7e-145 ribulose-phosphate 3-epimerase cytoplasmic isoform
blastp_kegg lcl|pper:PRUPE_ppa011042mg 1 226 + 226 none 100.00 226 86.73 1e-144 hypothetical protein
blastp_kegg lcl|mdm:103404212 1 226 + 226 none 100.00 226 87.61 2e-144 ribulose-phosphate 3-epimerase cytoplasmic isoform-like
blastp_kegg lcl|pmum:103330356 1 226 + 226 none 100.00 226 86.73 2e-144 ribulose-phosphate 3-epimerase cytoplasmic isoform
blastp_kegg lcl|cmo:103485491 1 226 + 226 none 100.00 226 86.28 3e-144 ribulose-phosphate 3-epimerase cytoplasmic isoform
blastp_kegg lcl|tcc:TCM_017163 1 225 + 225 none 99.56 226 87.56 4e-144 Aldolase-type TIM barrel family protein
blastp_pdb 1h1z_B 6 226 + 221 none 96.93 228 85.07 4e-143 mol:protein length:228 D-RIBULOSE-5-PHOSPHATE 3-EPIMERASE
blastp_pdb 1h1z_A 6 226 + 221 none 96.93 228 85.07 4e-143 mol:protein length:228 D-RIBULOSE-5-PHOSPHATE 3-EPIMERASE
blastp_pdb 1h1y_B 6 226 + 221 none 96.93 228 85.07 4e-143 mol:protein length:228 D-RIBULOSE-5-PHOSPHATE 3-EPIMERASE
blastp_pdb 1h1y_A 6 226 + 221 none 96.93 228 85.07 4e-143 mol:protein length:228 D-RIBULOSE-5-PHOSPHATE 3-EPIMERASE
blastp_pdb 3ovr_B 1 224 + 224 Gaps:6 97.37 228 53.15 2e-76 mol:protein length:228 Ribulose-phosphate 3-epimerase
blastp_pdb 3ovr_A 1 224 + 224 Gaps:6 97.37 228 53.15 2e-76 mol:protein length:228 Ribulose-phosphate 3-epimerase
blastp_pdb 3ovq_B 1 224 + 224 Gaps:6 97.37 228 53.15 2e-76 mol:protein length:228 Ribulose-phosphate 3-epimerase
blastp_pdb 3ovq_A 1 224 + 224 Gaps:6 97.37 228 53.15 2e-76 mol:protein length:228 Ribulose-phosphate 3-epimerase
blastp_pdb 3ovp_B 1 224 + 224 Gaps:6 97.37 228 53.15 2e-76 mol:protein length:228 Ribulose-phosphate 3-epimerase
blastp_pdb 3ovp_A 1 224 + 224 Gaps:6 97.37 228 53.15 2e-76 mol:protein length:228 Ribulose-phosphate 3-epimerase
blastp_uniprot_sprot sp|Q9SE42|RPE1_ORYSJ 6 226 + 221 none 96.93 228 85.07 1e-142 Ribulose-phosphate 3-epimerase cytoplasmic isoform OS Oryza sativa subsp. japonica GN Os09g0505700 PE 1 SV 1
blastp_uniprot_sprot sp|O14105|RPE_SCHPO 3 226 + 224 Gaps:7 97.81 228 57.40 2e-83 Ribulose-phosphate 3-epimerase OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC31G5.05c PE 3 SV 1
blastp_uniprot_sprot sp|Q6FL81|RPE_CANGA 7 220 + 214 Gaps:20 91.87 246 52.65 1e-76 Ribulose-phosphate 3-epimerase OS Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN RPE1 PE 3 SV 1
blastp_uniprot_sprot sp|P46969|RPE_YEAST 7 219 + 213 Gaps:17 93.28 238 52.70 5e-76 Ribulose-phosphate 3-epimerase OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPE1 PE 1 SV 1
blastp_uniprot_sprot sp|Q96AT9|RPE_HUMAN 1 224 + 224 Gaps:6 97.37 228 53.15 9e-76 Ribulose-phosphate 3-epimerase OS Homo sapiens GN RPE PE 1 SV 1
blastp_uniprot_sprot sp|Q8VEE0|RPE_MOUSE 1 224 + 224 Gaps:6 97.37 228 52.70 2e-75 Ribulose-phosphate 3-epimerase OS Mus musculus GN Rpe PE 2 SV 1
blastp_uniprot_sprot sp|Q5R5Y2|RPE_PONAB 1 224 + 224 Gaps:6 97.37 228 52.70 6e-75 Ribulose-phosphate 3-epimerase OS Pongo abelii GN RPE PE 2 SV 1
blastp_uniprot_sprot sp|Q755M2|RPE_ASHGO 7 220 + 214 Gaps:15 92.47 239 53.39 2e-74 Ribulose-phosphate 3-epimerase OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN RPE1 PE 3 SV 1
blastp_uniprot_sprot sp|Q2QD12|RPEL1_HUMAN 1 224 + 224 Gaps:6 97.37 228 50.00 5e-69 Ribulose-phosphate 3-epimerase-like protein 1 OS Homo sapiens GN RPEL1 PE 2 SV 1
blastp_uniprot_sprot sp|P65760|RPE_MYCTU 7 223 + 217 Gaps:10 93.89 229 48.84 7e-61 Ribulose-phosphate 3-epimerase OS Mycobacterium tuberculosis GN rpe PE 3 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 34 48 15 PS01085 "KEGG:00030+5.1.3.1","KEGG:00040+5.1.3.1","KEGG:00710+5.1.3.1","MetaCyc:PWY-1861","MetaCyc:PWY-5723" Ribulose-phosphate 3-epimerase family signature 1. IPR000056
Gene3D 4 225 222 G3DSA:3.20.20.70 none none IPR013785
PIRSF 1 226 226 PIRSF001461 "KEGG:00030+5.1.3.1","KEGG:00040+5.1.3.1","KEGG:00710+5.1.3.1","MetaCyc:PWY-1861","MetaCyc:PWY-5723" none IPR026019
TIGRFAM 6 216 211 TIGR01163 "KEGG:00030+5.1.3.1","KEGG:00040+5.1.3.1","KEGG:00710+5.1.3.1","MetaCyc:PWY-1861","MetaCyc:PWY-5723" rpe: ribulose-phosphate 3-epimerase IPR000056
SUPERFAMILY 5 220 216 SSF51366 none none IPR011060
Pfam 6 205 200 PF00834 "KEGG:00030+5.1.3.1","KEGG:00040+5.1.3.1","KEGG:00710+5.1.3.1","MetaCyc:PWY-1861","MetaCyc:PWY-5723" Ribulose-phosphate 3 epimerase family IPR000056
PANTHER 1 224 224 PTHR11749 "KEGG:00030+5.1.3.1","KEGG:00040+5.1.3.1","KEGG:00710+5.1.3.1","MetaCyc:PWY-1861","MetaCyc:PWY-5723";signature_desc=RIBULOSE-5-PHOSPHATE-3-EPIMERASE none IPR000056
ProSitePatterns 140 162 23 PS01086 "KEGG:00030+5.1.3.1","KEGG:00040+5.1.3.1","KEGG:00710+5.1.3.1","MetaCyc:PWY-1861","MetaCyc:PWY-5723" Ribulose-phosphate 3-epimerase family signature 2. IPR000056

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting