Protein : Qrob_P0230620.2 Q. robur
Protein Identifier  ? Qrob_P0230620.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=17) 4.2.3.15 - Myrcene synthase. Code Enzyme  EC:4.2.3.15
Gene Prediction Quality  validated Protein length 

Sequence

Length: 599  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0000287 magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
GO:0010333 terpene synthase activity Catalysis of the formation of cyclic terpenes through the cyclization of linear terpenes (e.g. isopentenyl-PP, geranyl-PP, farnesyl-PP and geranylgeranyl-PP) containing varying numbers of isoprene units.
GO:0016829 lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100261705 29 594 + 566 Gaps:12 97.29 590 66.90 0.0 myrcene synthase chloroplastic-like
blastp_kegg lcl|vvi:100232956 1 594 + 594 Gaps:13 99.15 590 63.93 0.0 (-)-a-terpineol synthase (EC:4.2.3.111)
blastp_kegg lcl|vvi:100263483 3 594 + 592 Gaps:28 98.23 849 60.67 0.0 myrcene synthase chloroplastic-like
blastp_kegg lcl|vvi:100266404 1 594 + 594 Gaps:11 99.15 590 62.74 0.0 myrcene synthase chloroplastic-like
blastp_kegg lcl|vvi:100254181 2 594 + 593 Gaps:22 98.45 582 64.22 0.0 myrcene synthase chloroplastic-like
blastp_kegg lcl|vvi:100259297 1 594 + 594 Gaps:11 98.48 594 61.37 0.0 myrcene synthase chloroplastic-like
blastp_kegg lcl|rcu:RCOM_0766900 46 594 + 549 Gaps:3 99.82 551 63.09 0.0 (R)-limonene synthase putative (EC:4.2.3.20)
blastp_kegg lcl|vvi:100250958 1 594 + 594 Gaps:11 98.48 594 61.03 0.0 myrcene synthase chloroplastic-like
blastp_kegg lcl|vvi:100249802 15 595 + 581 Gaps:2 98.31 593 60.03 0.0 (+)-alpha-phellandrene synthase
blastp_kegg lcl|vvi:100248079 15 593 + 579 Gaps:2 97.98 593 60.24 0.0 myrcene synthase chloroplastic-like
blastp_pdb 2j5c_B 59 586 + 528 Gaps:9 92.27 569 50.86 0.0 mol:protein length:569 1 8-CINEOLE SYNTHASE
blastp_pdb 2j5c_A 59 586 + 528 Gaps:9 92.27 569 50.86 0.0 mol:protein length:569 1 8-CINEOLE SYNTHASE
blastp_pdb 2onh_B 57 593 + 537 Gaps:5 99.82 543 48.34 0.0 mol:protein length:543 4S-limonene synthase
blastp_pdb 2onh_A 57 593 + 537 Gaps:5 99.82 543 48.34 0.0 mol:protein length:543 4S-limonene synthase
blastp_pdb 2ong_B 57 593 + 537 Gaps:5 99.82 543 48.34 0.0 mol:protein length:543 4S-limonene synthase
blastp_pdb 2ong_A 57 593 + 537 Gaps:5 99.82 543 48.34 0.0 mol:protein length:543 4S-limonene synthase
blastp_pdb 3n0g_B 57 597 + 541 Gaps:4 97.48 555 48.61 5e-180 mol:protein length:555 Isoprene synthase
blastp_pdb 3n0g_A 57 597 + 541 Gaps:4 97.48 555 48.61 5e-180 mol:protein length:555 Isoprene synthase
blastp_pdb 3n0f_B 57 597 + 541 Gaps:4 97.48 555 48.61 5e-180 mol:protein length:555 Isoprene synthase
blastp_pdb 3n0f_A 57 597 + 541 Gaps:4 97.48 555 48.61 5e-180 mol:protein length:555 Isoprene synthase
blastp_uniprot_sprot sp|Q93X23|MYRS_QUEIL 1 598 + 598 Gaps:7 100.00 597 72.86 0.0 Myrcene synthase chloroplastic OS Quercus ilex PE 1 SV 1
blastp_uniprot_sprot sp|Q6PWU2|ATESY_VITVI 1 594 + 594 Gaps:13 99.15 590 64.10 0.0 (-)-alpha-terpineol synthase OS Vitis vinifera PE 1 SV 1
blastp_uniprot_sprot sp|B9T536|TPS10_RICCO 46 594 + 549 Gaps:3 99.82 551 63.09 0.0 Terpene synthase 10 OS Ricinus communis GN TPS10 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L5K4|GTPS_CITLI 1 594 + 594 Gaps:28 100.00 600 59.33 0.0 Gamma-terpinene synthase chloroplastic OS Citrus limon PE 1 SV 1
blastp_uniprot_sprot sp|B3TPQ7|ATESY_MAGGA 1 593 + 593 Gaps:30 99.16 592 56.90 0.0 Alpha-terpineol synthase chloroplastic OS Magnolia grandiflora PE 1 SV 1
blastp_uniprot_sprot sp|A7IZZ1|TPS1_CANSA 42 594 + 553 Gaps:16 90.51 622 53.11 0.0 (-)-limonene synthase chloroplastic OS Cannabis sativa GN TPS1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8L5K3|RLC1_CITLI 9 594 + 586 Gaps:14 97.36 606 51.69 0.0 (R)-limonene synthase 1 OS Citrus limon PE 2 SV 1
blastp_uniprot_sprot sp|A7IZZ2|TPS2_CANSA 33 594 + 562 Gaps:14 92.68 615 53.16 0.0 (+)-alpha-pinene synthase chloroplastic OS Cannabis sativa PE 1 SV 1
blastp_uniprot_sprot sp|J7LQ09|TPS7_PHYDL 57 593 + 537 Gaps:8 99.08 542 52.14 0.0 Trans-alpha-bergamotene synthase OS Phyla dulcis PE 1 SV 1
blastp_uniprot_sprot sp|G1JUH1|TPS3_SOLLC 7 593 + 587 Gaps:21 99.18 607 47.51 0.0 (-)-camphene/tricyclene synthase chloroplastic OS Solanum lycopersicum GN TPS3 PE 1 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 84 282 199 G3DSA:1.50.30.10 none none IPR001906
Phobius 21 598 578 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 64 268 205 SSF48239 none none IPR008930
Phobius 1 20 20 SIGNAL_PEPTIDE none Signal peptide region none
SUPERFAMILY 268 593 326 SSF48576 none none IPR008949
Pfam 272 540 269 PF03936 none Terpene synthase family, metal binding domain IPR005630
PANTHER 52 595 544 PTHR31225 none none none
Pfam 68 242 175 PF01397 none Terpene synthase, N-terminal domain IPR001906
Gene3D 283 594 312 G3DSA:1.10.600.10 none none IPR008949
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 2 12 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 13 20 8 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
PANTHER 52 595 544 PTHR31225:SF0 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 18   Secretory pathway 4 0.524 0.142 NON-PLANT 18