Protein : Qrob_P0217170.2 Q. robur
Protein Identifier  ? Qrob_P0217170.2 Organism . Name  Quercus robur
Score  8.3 Score Type  egn
Protein Description  (M=3) PF02309//PF06507 - AUX/IAA family // Auxin response factor Gene Prediction Quality  validated
Protein length 

Sequence

Length: 665  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0009725 response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000708mg 1 664 + 664 Gaps:28 59.98 1027 79.06 0.0 hypothetical protein
blastp_kegg lcl|pmum:103340619 1 664 + 664 Gaps:27 51.16 1165 80.87 0.0 auxin response factor 7-like
blastp_kegg lcl|fve:101303549 1 664 + 664 Gaps:11 47.46 1161 83.12 0.0 uncharacterized protein LOC101303549
blastp_kegg lcl|mdm:103400912 1 664 + 664 Gaps:8 54.87 1150 79.40 0.0 auxin response factor 19-like
blastp_kegg lcl|pxb:103950246 1 664 + 664 Gaps:39 61.73 1108 74.12 0.0 auxin response factor 19
blastp_kegg lcl|vvi:100257618 1 664 + 664 Gaps:43 64.67 1084 75.46 0.0 auxin response factor 19-like
blastp_kegg lcl|rcu:RCOM_0710450 1 664 + 664 Gaps:10 51.12 1119 80.94 0.0 Auxin response factor putative
blastp_kegg lcl|tcc:TCM_037484 1 664 + 664 Gaps:15 57.47 1145 79.03 0.0 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 1
blastp_kegg lcl|cic:CICLE_v10007286mg 1 664 + 664 Gaps:9 55.73 1134 78.64 0.0 hypothetical protein
blastp_kegg lcl|cit:102628827 1 664 + 664 Gaps:9 55.68 1135 78.01 0.0 auxin response factor 7-like
blastp_uniprot_sprot sp|Q8RYC8|ARFS_ARATH 1 664 + 664 Gaps:39 62.89 1086 59.74 5e-134 Auxin response factor 19 OS Arabidopsis thaliana GN ARF19 PE 1 SV 2
blastp_uniprot_sprot sp|P93022|ARFG_ARATH 1 664 + 664 Gaps:36 48.97 1164 66.32 3e-131 Auxin response factor 7 OS Arabidopsis thaliana GN ARF7 PE 1 SV 2
blastp_uniprot_sprot sp|A3B9A0|ARFP_ORYSJ 1 652 + 652 Gaps:27 50.71 1055 60.37 2e-106 Auxin response factor 16 OS Oryza sativa subsp. japonica GN ARF16 PE 2 SV 1
blastp_uniprot_sprot sp|A2YAA5|ARFP_ORYSI 1 652 + 652 Gaps:27 50.71 1055 60.37 2e-106 Auxin response factor 16 OS Oryza sativa subsp. indica GN ARF16 PE 2 SV 1
blastp_uniprot_sprot sp|Q6Z2W3|ARFE_ORYSJ 4 656 + 653 Gaps:82 56.74 1142 46.60 1e-63 Auxin response factor 5 OS Oryza sativa subsp. japonica GN ARF5 PE 2 SV 2
blastp_uniprot_sprot sp|Q0D9R7|ARFS_ORYSJ 4 660 + 657 Gaps:68 47.46 1161 48.09 1e-62 Auxin response factor 19 OS Oryza sativa subsp. japonica GN ARF19 PE 2 SV 2
blastp_uniprot_sprot sp|Q6YZW0|ARFU_ORYSJ 4 652 + 649 Gaps:49 44.27 1116 48.58 8e-58 Auxin response factor 21 OS Oryza sativa subsp. japonica GN ARF21 PE 2 SV 2
blastp_uniprot_sprot sp|P93024|ARFE_ARATH 3 630 + 628 Gaps:46 46.90 902 39.72 6e-37 Auxin response factor 5 OS Arabidopsis thaliana GN ARF5 PE 1 SV 3
blastp_uniprot_sprot sp|Q8S983|ARFK_ORYSJ 2 630 + 629 Gaps:6 17.07 955 62.58 9e-35 Auxin response factor 11 OS Oryza sativa subsp. japonica GN ARF11 PE 2 SV 1
blastp_uniprot_sprot sp|Q01K26|ARFK_ORYSI 2 630 + 629 Gaps:6 17.07 955 62.58 9e-35 Auxin response factor 11 OS Oryza sativa subsp. indica GN ARF11 PE 3 SV 2
rpsblast_cdd gnl|CDD|202200 539 628 + 90 Gaps:6 51.06 188 31.25 5e-20 pfam02309 AUX_IAA AUX/IAA family. Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.
rpsblast_cdd gnl|CDD|191545 1 49 + 49 Gaps:6 51.81 83 55.81 3e-12 pfam06507 Auxin_resp Auxin response factor. A conserved region of auxin-responsive transcription factors.
rpsblast_cdd gnl|CDD|204310 186 314 + 129 Gaps:5 15.92 804 20.31 8e-07 pfam09770 PAT1 Topoisomerase II-associated protein PAT1. Members of this family are necessary for accurate chromosome transmission during cell division.
rpsblast_kog gnl|CDD|38804 129 306 + 178 Gaps:10 8.20 2220 20.33 2e-07 KOG3598 KOG3598 KOG3598 Thyroid hormone receptor-associated protein complex subunit TRAP230 [Transcription].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 353 353 PTHR31384:SF9 none none none
SUPERFAMILY 554 616 63 SSF54277 none none none
Pfam 1 38 38 PF06507 none Auxin response factor IPR010525
Pfam 532 627 96 PF02309 none AUX/IAA family IPR003311
ProSiteProfiles 538 622 85 PS51745 none PB1 domain profile. IPR000270
PANTHER 442 661 220 PTHR31384:SF9 none none none
PANTHER 442 661 220 PTHR31384 none none none
PANTHER 1 353 353 PTHR31384 none none none

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting