Protein : Qrob_P0216560.2 Q. robur
Protein Identifier  ? Qrob_P0216560.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K03105 - signal recognition particle subunit SRP19 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 136  
Kegg Orthology  K03105
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006614 SRP-dependent cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
GO:0008312 7S RNA binding Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
GO:0048500 signal recognition particle A complex of protein and RNA which facilitates translocation of proteins across membranes.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_029324 1 135 + 135 none 100.00 135 82.22 2e-75 Signal recognition particle 19 kDa protein
blastp_kegg lcl|cmo:103483920 1 125 + 125 none 93.28 134 84.80 3e-74 signal recognition particle 19 kDa protein
blastp_kegg lcl|pxb:103940764 1 135 + 135 Gaps:1 100.00 136 80.88 8e-74 signal recognition particle 19 kDa protein-like
blastp_kegg lcl|pxb:103950304 1 135 + 135 Gaps:1 100.00 136 80.88 8e-74 signal recognition particle 19 kDa protein-like
blastp_kegg lcl|pop:POPTR_0012s04280g 1 135 + 135 none 99.26 136 78.52 2e-73 POPTRDRAFT_728715 Signal recognition particle 19 kDa family protein
blastp_kegg lcl|csv:101204558 1 125 + 125 none 93.28 134 83.20 3e-73 signal recognition particle 19 kDa protein-like
blastp_kegg lcl|csv:101212893 1 125 + 125 Gaps:1 93.33 135 83.33 7e-73 signal recognition particle 19 kDa protein-like
blastp_kegg lcl|cam:101501421 1 135 + 135 Gaps:1 98.55 138 79.41 8e-73 signal recognition particle 19 kDa protein-like
blastp_kegg lcl|gmx:100801614 4 135 + 132 Gaps:1 97.08 137 80.45 1e-72 signal recognition particle 19 kDa protein-like
blastp_kegg lcl|pvu:PHAVU_004G071200g 4 135 + 132 Gaps:1 97.08 137 80.45 3e-72 hypothetical protein
blastp_pdb 2j37_B 10 112 + 103 Gaps:4 99.07 108 48.60 1e-27 mol:protein length:108 SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN (S
blastp_pdb 2go5_B 10 112 + 103 Gaps:4 99.07 108 48.60 1e-27 mol:protein length:108 Signal recognition particle 19 kDa protein (S
blastp_pdb 1ry1_B 10 112 + 103 Gaps:4 99.07 108 48.60 1e-27 mol:protein length:108 PROTEIN (Signal recognition particle 19 kDa p
blastp_pdb 1mfq_B 10 112 + 103 Gaps:4 99.07 108 48.60 1e-27 mol:protein length:108 signal recognition particle 19kDa protein
blastp_pdb 3ktv_D 10 112 + 103 Gaps:4 83.59 128 48.60 3e-27 mol:protein length:128 Signal recognition particle 19 kDa protein
blastp_pdb 3ktv_B 10 112 + 103 Gaps:4 83.59 128 48.60 3e-27 mol:protein length:128 Signal recognition particle 19 kDa protein
blastp_pdb 1jid_A 10 112 + 103 Gaps:4 83.59 128 48.60 3e-27 mol:protein length:128 SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN
blastp_pdb 1l9a_A 12 76 + 65 Gaps:1 75.86 87 36.36 8e-06 mol:protein length:87 SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN
blastp_uniprot_sprot sp|P49964|SRP19_ORYSJ 7 125 + 119 none 87.50 136 73.11 6e-60 Signal recognition particle 19 kDa protein OS Oryza sativa subsp. japonica GN SRP19 PE 1 SV 1
blastp_uniprot_sprot sp|Q943Z6|SRP19_ARATH 1 111 + 111 none 76.55 145 77.48 3e-59 Signal recognition particle 19 kDa protein OS Arabidopsis thaliana GN SRP19 PE 2 SV 1
blastp_uniprot_sprot sp|Q9D7A6|SRP19_MOUSE 10 113 + 104 Gaps:4 75.00 144 50.00 2e-28 Signal recognition particle 19 kDa protein OS Mus musculus GN Srp19 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RBR1|SRP19_PONAB 10 132 + 123 Gaps:11 83.33 144 47.50 7e-28 Signal recognition particle 19 kDa protein OS Pongo abelii GN SRP19 PE 1 SV 2
blastp_uniprot_sprot sp|P09132|SRP19_HUMAN 10 132 + 123 Gaps:11 83.33 144 47.50 7e-28 Signal recognition particle 19 kDa protein OS Homo sapiens GN SRP19 PE 1 SV 3
blastp_uniprot_sprot sp|Q3ZBG7|SRP19_BOVIN 10 132 + 123 Gaps:11 83.33 144 46.67 2e-27 Signal recognition particle 19 kDa protein OS Bos taurus GN SRP19 PE 2 SV 1
blastp_uniprot_sprot sp|O14415|SEC65_CANAX 2 108 + 107 Gaps:2 39.64 275 36.70 4e-20 Signal recognition particle SEC65 subunit OS Candida albicans GN SEC65 PE 3 SV 1
blastp_uniprot_sprot sp|O61749|SRP19_CAEEL 9 109 + 101 Gaps:9 76.06 142 44.44 4e-20 Probable signal recognition particle 19 kDa protein OS Caenorhabditis elegans GN F37F2.2 PE 3 SV 4
blastp_uniprot_sprot sp|Q554G7|SRP19_DICDI 6 104 + 99 Gaps:1 56.18 178 39.00 4e-19 Signal recognition particle 19 kDa protein homolog OS Dictyostelium discoideum GN srp19 PE 3 SV 1
blastp_uniprot_sprot sp|P41922|SEC65_YARLI 7 110 + 104 Gaps:3 33.87 310 39.05 4e-18 Signal recognition particle SEC65 subunit OS Yarrowia lipolytica (strain CLIB 122 / E 150) GN SEC65 PE 3 SV 1
rpsblast_cdd gnl|CDD|202047 13 108 + 96 Gaps:7 98.91 92 46.15 1e-26 pfam01922 SRP19 SRP19 protein. The signal recognition particle (SRP) binds to the signal peptide of proteins as they are being translated. The binding of the SRP halts translation and the complex is then transported to the endoplasmic reticulum's cytoplasmic surface. The SRP then aids translocation of the protein through the ER membrane. The SRP is a ribonucleoprotein that is composed of a small RNA and several proteins. One of these proteins is the SRP19 protein (Sec65 in yeast).
rpsblast_cdd gnl|CDD|179110 13 76 + 64 Gaps:1 68.42 95 41.54 8e-08 PRK00754 PRK00754 signal recognition particle protein Srp19 Provisional.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 3 117 115 G3DSA:3.30.56.30 none none IPR002778
PANTHER 7 135 129 PTHR17453:SF0 none none none
Pfam 13 107 95 PF01922 none SRP19 protein IPR002778
PANTHER 7 135 129 PTHR17453 none none IPR002778
SUPERFAMILY 2 109 108 SSF69695 none none IPR002778

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting