Protein : Qrob_P0211360.2 Q. robur
Protein Identifier  ? Qrob_P0211360.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) PF03175 - DNA polymerase type B, organellar and viral Gene Prediction Quality  validated
Protein length 

Sequence

Length: 195  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO:0003887 DNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
GO:0008408 3'-5' exonuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101211225 22 194 + 173 Gaps:1 53.54 325 57.47 4e-68 DNA polymerase-like
blastp_kegg lcl|csv:101213507 19 194 + 176 Gaps:1 29.26 605 57.06 1e-65 DNA polymerase-like
blastp_kegg lcl|csv:101224705 123 194 + 72 Gaps:1 25.61 285 65.75 1e-23 DNA polymerase-like
blastp_kegg lcl|bthi:BTK_34966 8 193 + 186 Gaps:55 30.11 734 30.77 4e-13 type B DNA polymerase
blastp_kegg lcl|btn:BTF1_32986 8 193 + 186 Gaps:55 30.11 734 30.77 5e-13 type B DNA polymerase
blastp_kegg lcl|bce:BCp0005 78 159 + 82 Gaps:8 12.35 729 37.78 3e-07 type B DNA polymerase (EC:2.7.7.7)
blastp_kegg lcl|cci:CC1G_22011 8 192 + 185 Gaps:43 23.19 940 26.15 9e-07 RNA polymerase
blastp_uniprot_sprot sp|P10582|DPOM_MAIZE 11 194 + 184 Gaps:8 20.24 929 50.00 6e-49 DNA polymerase OS Zea mays PE 3 SV 1
blastp_uniprot_sprot sp|P33538|DPOM_NEUIN 47 193 + 147 Gaps:13 15.69 969 38.82 1e-17 Probable DNA polymerase OS Neurospora intermedia PE 3 SV 1
blastp_uniprot_sprot sp|Q01529|DPOM_PODAS 47 192 + 146 Gaps:6 11.70 1197 37.86 5e-16 Probable DNA polymerase OS Podospora anserina PE 3 SV 1
blastp_uniprot_sprot sp|P30322|DPOM_AGABT 1 166 + 166 Gaps:37 24.97 797 30.15 1e-12 Probable DNA polymerase (Fragment) OS Agaricus bitorquis PE 3 SV 1
blastp_uniprot_sprot sp|P22374|DPOM_ASCIM 48 184 + 137 Gaps:1 11.31 1202 31.62 8e-12 Probable DNA polymerase OS Ascobolus immersus PE 3 SV 1
blastp_uniprot_sprot sp|P22373|DPOM_CLAPU 51 193 + 143 Gaps:10 14.02 1063 32.21 2e-09 Probable DNA polymerase OS Claviceps purpurea PE 3 SV 1
rpsblast_cdd gnl|CDD|146012 3 194 + 192 Gaps:36 50.00 452 25.66 7e-28 pfam03175 DNA_pol_B_2 DNA polymerase type B organellar and viral. Like pfam00136 members of this family are also DNA polymerase type B proteins. Those included here are found in plant and fungal mitochondria and in viruses.
rpsblast_cdd gnl|CDD|164958 5 193 + 189 Gaps:27 31.43 630 24.24 3e-11 PHA02563 PHA02563 DNA polymerase Provisional.

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 40 194 155 PF03175 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA polymerase type B, organellar and viral IPR004868
SUPERFAMILY 84 194 111 SSF56672 none none none
SUPERFAMILY 3 74 72 SSF53098 none none IPR012337
Gene3D 88 152 65 G3DSA:3.90.1600.10 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" none IPR023211

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 7   Mitochondrion 5 0.257 0.305 NON-PLANT 7