Protein : Qrob_P0207550.2 Q. robur
Protein Identifier  ? Qrob_P0207550.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) 4.4.1.11 - Methionine gamma-lyase. Code Enzyme  EC:4.4.1.11
Gene Prediction Quality  validated Protein length 

Sequence

Length: 433  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0030170 pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0011s12610g 2 432 + 431 Gaps:27 89.98 449 90.84 0.0 POPTRDRAFT_823015 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa005606mg 2 432 + 431 Gaps:27 89.38 452 90.10 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_031333 2 427 + 426 Gaps:27 77.18 517 91.48 0.0 Uncharacterized protein isoform 1
blastp_kegg lcl|pxb:103927405 2 432 + 431 Gaps:27 89.38 452 89.36 0.0 uncharacterized LOC103927405
blastp_kegg lcl|pvu:PHAVU_011G154500g 2 432 + 431 Gaps:27 95.73 422 88.61 0.0 hypothetical protein
blastp_kegg lcl|mtr:MTR_8g093250 2 432 + 431 Gaps:27 90.18 448 89.36 0.0 hypothetical protein
blastp_kegg lcl|fve:101296072 3 432 + 430 Gaps:27 88.57 455 88.83 0.0 uncharacterized protein YnbB-like
blastp_kegg lcl|cmo:103495002 2 432 + 431 Gaps:27 88.99 454 87.38 0.0 uncharacterized LOC103495002
blastp_kegg lcl|csv:101215148 2 432 + 431 Gaps:27 88.99 454 86.39 0.0 uncharacterized LOC101215148
blastp_kegg lcl|cam:101501197 2 432 + 431 Gaps:27 90.99 444 87.62 0.0 uncharacterized LOC101501197
blastp_pdb 3ht4_H 3 425 + 423 Gaps:31 91.42 431 44.16 5e-114 mol:protein length:431 Aluminum resistance protein
blastp_pdb 3ht4_G 3 425 + 423 Gaps:31 91.42 431 44.16 5e-114 mol:protein length:431 Aluminum resistance protein
blastp_pdb 3ht4_F 3 425 + 423 Gaps:31 91.42 431 44.16 5e-114 mol:protein length:431 Aluminum resistance protein
blastp_pdb 3ht4_E 3 425 + 423 Gaps:31 91.42 431 44.16 5e-114 mol:protein length:431 Aluminum resistance protein
blastp_pdb 3ht4_D 3 425 + 423 Gaps:31 91.42 431 44.16 5e-114 mol:protein length:431 Aluminum resistance protein
blastp_pdb 3ht4_C 3 425 + 423 Gaps:31 91.42 431 44.16 5e-114 mol:protein length:431 Aluminum resistance protein
blastp_pdb 3ht4_B 3 425 + 423 Gaps:31 91.42 431 44.16 5e-114 mol:protein length:431 Aluminum resistance protein
blastp_pdb 3ht4_A 3 425 + 423 Gaps:31 91.42 431 44.16 5e-114 mol:protein length:431 Aluminum resistance protein
blastp_pdb 3jzl_B 2 432 + 431 Gaps:33 97.31 409 43.72 3e-110 mol:protein length:409 Putative cystathionine beta-lyase involved in
blastp_pdb 3jzl_A 2 432 + 431 Gaps:33 97.31 409 43.72 3e-110 mol:protein length:409 Putative cystathionine beta-lyase involved in
blastp_uniprot_sprot sp|P94479|YNBB_BACSU 15 420 + 406 Gaps:29 89.55 421 44.83 1e-114 Uncharacterized protein YnbB OS Bacillus subtilis (strain 168) GN ynbB PE 4 SV 2
blastp_uniprot_sprot sp|P45624|YGLN_LACDE 106 420 + 315 Gaps:38 93.79 306 44.25 2e-69 Uncharacterized 33.9 kDa protein in glnA 5'region OS Lactobacillus delbrueckii subsp. bulgaricus PE 4 SV 1
blastp_uniprot_sprot sp|P45625|YGLN_BACCE 362 420 + 59 none 73.75 80 47.46 2e-11 Uncharacterized protein in glnR 5'region (Fragment) OS Bacillus cereus PE 4 SV 1
blastp_uniprot_sprot sp|P46807|METB_MYCLE 56 246 + 191 Gaps:33 43.30 388 30.95 4e-06 Cystathionine gamma-synthase OS Mycobacterium leprae (strain TN) GN metB PE 3 SV 1
rpsblast_cdd gnl|CDD|148445 5 432 + 428 Gaps:30 98.27 405 53.02 1e-160 pfam06838 Alum_res Aluminium resistance protein. This family represents the aluminium resistance protein which confers resistance to aluminium in bacteria. Structural characterisation has shown proteins in this family bind a pyridoxal-5'-phosphate cofactor and that they belongs to the PLP dependent aminotransferase superfamily. Crystal packing analysis suggests that in solution a tetramer may be the stable oligomeric form. This is in contrast to most other aminotransferases which form dimers (information from TOPSAN).
rpsblast_cdd gnl|CDD|33857 2 432 + 431 Gaps:30 96.39 416 50.37 1e-140 COG4100 COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism].
rpsblast_cdd gnl|CDD|30971 56 256 + 201 Gaps:28 45.20 396 31.28 1e-09 COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism].
rpsblast_cdd gnl|CDD|201574 56 244 + 189 Gaps:41 43.98 382 34.52 2e-09 pfam01053 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase Cystathionine gamma-synthase Cystathionine beta-lyase Methionine gamma-lyase OAH/OAS sulfhydrylase O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.
rpsblast_cdd gnl|CDD|181005 31 255 + 225 Gaps:54 49.88 403 33.83 5e-07 PRK07503 PRK07503 methionine gamma-lyase Provisional.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 13 284 272 PTHR11808:SF41 none none none
PANTHER 312 427 116 PTHR11808:SF41 none none none
PANTHER 13 284 272 PTHR11808 none none IPR000277
PANTHER 312 427 116 PTHR11808 none none IPR000277
Pfam 309 431 123 PF06838 none Methionine gamma-lyase IPR009651
Pfam 5 289 285 PF06838 none Methionine gamma-lyase IPR009651
SUPERFAMILY 25 289 265 SSF53383 none none IPR015424
SUPERFAMILY 317 430 114 SSF53383 none none IPR015424
Gene3D 26 257 232 G3DSA:3.40.640.10 none none IPR015421

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting