Protein : Qrob_P0204820.2 Q. robur
Protein Identifier  ? Qrob_P0204820.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR10742:SF246 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 1 (PTHR10742:SF246) Code Enzyme  EC:1.5.3.16
Gene Prediction Quality  validated Protein length 

Sequence

Length: 809  
Kegg Orthology  K11450
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0016575 histone deacetylation The modification of histones by removal of acetyl groups.
GO:0051568 histone H3-K4 methylation The modification of histone H3 by addition of a methyl group to lysine at position 4 of the histone.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103440209 14 804 + 791 Gaps:23 98.65 815 81.72 0.0 lysine-specific histone demethylase 1 homolog 1-like
blastp_kegg lcl|pper:PRUPE_ppa001504mg 9 804 + 796 Gaps:21 99.75 813 82.00 0.0 hypothetical protein
blastp_kegg lcl|pmum:103321164 9 804 + 796 Gaps:25 99.75 813 82.24 0.0 lysine-specific histone demethylase 1 homolog 1
blastp_kegg lcl|tcc:TCM_034356 11 802 + 792 Gaps:22 99.36 783 81.75 0.0 LSD1-like 1
blastp_kegg lcl|pxb:103927156 26 804 + 779 Gaps:19 97.42 815 80.98 0.0 lysine-specific histone demethylase 1 homolog 1
blastp_kegg lcl|mdm:103450327 26 804 + 779 Gaps:19 97.42 815 80.98 0.0 lysine-specific histone demethylase 1 homolog 1-like
blastp_kegg lcl|fve:101301076 1 797 + 797 Gaps:18 99.49 791 80.69 0.0 lysine-specific histone demethylase 1 homolog 1-like
blastp_kegg lcl|cic:CICLE_v10000325mg 11 803 + 793 Gaps:16 99.50 797 79.07 0.0 hypothetical protein
blastp_kegg lcl|cit:102630935 11 803 + 793 Gaps:16 99.50 797 79.07 0.0 lysine-specific histone demethylase 1 homolog 1-like
blastp_kegg lcl|pop:POPTR_0002s01450g 11 802 + 792 Gaps:16 98.87 795 79.01 0.0 POPTRDRAFT_550801 amine oxidase family protein
blastp_pdb 3abu_A 132 670 + 539 Gaps:41 81.12 662 41.90 1e-70 mol:protein length:662 Lysine-specific histone demethylase 1
blastp_pdb 3abt_A 132 670 + 539 Gaps:41 81.12 662 41.90 1e-70 mol:protein length:662 Lysine-specific histone demethylase 1
blastp_pdb 2z5u_A 132 670 + 539 Gaps:41 81.12 662 41.90 1e-70 mol:protein length:662 Lysine-specific histone demethylase 1
blastp_pdb 2z3y_A 132 670 + 539 Gaps:41 81.12 662 41.90 1e-70 mol:protein length:662 Lysine-specific histone demethylase 1
blastp_pdb 2ejr_A 132 670 + 539 Gaps:41 81.12 662 41.90 1e-70 mol:protein length:662 Lysine-specific histone demethylase 1
blastp_pdb 2dw4_A 132 670 + 539 Gaps:41 81.36 660 41.90 1e-70 mol:protein length:660 Lysine-specific histone demethylase 1
blastp_pdb 2uxx_A 132 670 + 539 Gaps:41 80.63 666 41.90 2e-70 mol:protein length:666 LYSINE-SPECIFIC HISTONE DEMETHYLASE 1
blastp_pdb 2uxn_A 132 670 + 539 Gaps:41 80.63 666 41.90 2e-70 mol:protein length:666 LYSINE-SPECIFIC HISTONE DEMETHYLASE 1
blastp_pdb 2iw5_A 132 670 + 539 Gaps:41 80.63 666 41.90 2e-70 mol:protein length:666 LYSINE-SPECIFIC HISTONE DEMETHYLASE 1
blastp_pdb 2h94_A 132 670 + 539 Gaps:41 80.87 664 41.90 2e-70 mol:protein length:664 Lysine-specific histone demethylase 1
blastp_uniprot_sprot sp|Q8VXV7|LDL1_ARATH 14 800 + 787 Gaps:37 95.50 844 68.73 0.0 Lysine-specific histone demethylase 1 homolog 1 OS Arabidopsis thaliana GN LDL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6Z690|LDL1_ORYSJ 109 795 + 687 Gaps:18 82.33 849 61.80 0.0 Lysine-specific histone demethylase 1 homolog 1 OS Oryza sativa subsp. japonica GN Os02g0755200 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CAE3|LDL3_ARATH 123 799 + 677 Gaps:33 88.72 789 58.57 0.0 Lysine-specific histone demethylase 1 homolog 3 OS Arabidopsis thaliana GN FLD PE 1 SV 1
blastp_uniprot_sprot sp|Q01H90|LDL3_ORYSI 76 798 + 723 Gaps:55 94.94 811 53.77 0.0 Lysine-specific histone demethylase 1 homolog 3 OS Oryza sativa subsp. indica GN B0103C08-B0602B01.13 PE 3 SV 1
blastp_uniprot_sprot sp|Q7XUR2|LDL3_ORYSJ 76 798 + 723 Gaps:55 94.94 811 53.64 0.0 Lysine-specific histone demethylase 1 homolog 3 OS Oryza sativa subsp. japonica GN Os04g0560300 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LID0|LDL2_ARATH 85 796 + 712 Gaps:24 96.51 746 53.89 0.0 Lysine-specific histone demethylase 1 homolog 2 OS Arabidopsis thaliana GN LDL2 PE 2 SV 1
blastp_uniprot_sprot sp|Q6YYZ1|LDL2_ORYSJ 120 800 + 681 Gaps:52 91.87 763 49.64 0.0 Lysine-specific histone demethylase 1 homolog 2 OS Oryza sativa subsp. japonica GN Os08g0143400 PE 2 SV 1
blastp_uniprot_sprot sp|Q8NB78|KDM1B_HUMAN 163 670 + 508 Gaps:25 62.41 822 36.06 2e-78 Lysine-specific histone demethylase 1B OS Homo sapiens GN KDM1B PE 1 SV 3
blastp_uniprot_sprot sp|Q8CIG3|KDM1B_MOUSE 163 670 + 508 Gaps:27 61.86 826 35.42 4e-74 Lysine-specific histone demethylase 1B OS Mus musculus GN Kdm1b PE 1 SV 1
blastp_uniprot_sprot sp|O60341|KDM1A_HUMAN 137 670 + 534 Gaps:60 67.02 852 40.63 4e-69 Lysine-specific histone demethylase 1A OS Homo sapiens GN KDM1A PE 1 SV 2

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 505 522 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 542 562 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 84 740 657 PTHR10742:SF246 none none IPR031138
Phobius 1 235 235 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 84 740 657 PTHR10742 none none none
Phobius 262 504 243 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 629 672 44 SSF51905 none none none
SUPERFAMILY 235 525 291 SSF51905 none none none
Gene3D 235 279 45 G3DSA:3.50.50.60 none none none
SUPERFAMILY 506 619 114 SSF54373 none none none
Phobius 523 541 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 126 226 101 SSF46689 none none IPR009057
Pfam 243 671 429 PF01593 none Flavin containing amine oxidoreductase IPR002937
ProSiteProfiles 122 223 102 PS50934 none SWIRM domain profile. IPR007526
Pfam 131 214 84 PF04433 none SWIRM domain IPR007526
Gene3D 132 225 94 G3DSA:1.10.10.10 none none IPR011991
Phobius 236 261 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 563 808 246 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 419 625 207 G3DSA:3.90.660.10 none none none

0 Localization

15 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting