Protein : Qrob_P0202150.2 Q. robur
Protein Identifier  ? Qrob_P0202150.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=2) PTHR13215 - RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR Gene Prediction Quality  validated
Protein length 

Sequence

Length: 474  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

5 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0003713 transcription coactivator activity Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_005132 1 465 + 465 Gaps:30 76.63 612 56.08 4e-178 Zinc knuckle family protein putative isoform 1
blastp_kegg lcl|pmum:103332196 1 466 + 466 Gaps:44 98.59 497 54.08 4e-168 uncharacterized LOC103332196
blastp_kegg lcl|pper:PRUPE_ppb013833mg 1 466 + 466 Gaps:44 98.59 497 54.29 3e-167 hypothetical protein
blastp_kegg lcl|cit:102626154 8 443 + 436 Gaps:29 95.78 450 54.29 3e-157 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10020119mg 8 443 + 436 Gaps:29 95.78 450 54.29 4e-157 hypothetical protein
blastp_kegg lcl|pop:POPTR_0002s17290g 1 466 + 466 Gaps:28 98.72 470 52.37 8e-154 POPTRDRAFT_409488 zinc knuckle family protein
blastp_kegg lcl|mdm:103415445 1 448 + 448 Gaps:29 95.41 479 52.74 3e-153 uncharacterized LOC103415445
blastp_kegg lcl|pxb:103929314 1 466 + 466 Gaps:44 93.18 513 51.05 4e-150 uncharacterized LOC103929314
blastp_kegg lcl|gmx:100800963 1 443 + 443 Gaps:76 90.69 548 48.49 2e-142 uncharacterized LOC100800963
blastp_kegg lcl|pvu:PHAVU_006G113800g 1 471 + 471 Gaps:41 98.79 494 47.95 2e-139 hypothetical protein
blastp_pdb 2phe_B 97 161 + 65 Gaps:1 100.00 66 42.42 9e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_pdb 2phe_A 97 161 + 65 Gaps:1 100.00 66 42.42 9e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_pdb 2c62_B 97 161 + 65 Gaps:1 100.00 66 42.42 9e-11 mol:protein length:66 ACTIVATED RNA POLYMERASE II TRANSCRIPTIONAL C
blastp_pdb 2c62_A 97 161 + 65 Gaps:1 100.00 66 42.42 9e-11 mol:protein length:66 ACTIVATED RNA POLYMERASE II TRANSCRIPTIONAL C
blastp_pdb 1pcf_H 97 161 + 65 Gaps:1 100.00 66 42.42 9e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_pdb 1pcf_G 97 161 + 65 Gaps:1 100.00 66 42.42 9e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_pdb 1pcf_F 97 161 + 65 Gaps:1 100.00 66 42.42 9e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_pdb 1pcf_E 97 161 + 65 Gaps:1 100.00 66 42.42 9e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_pdb 1pcf_D 97 161 + 65 Gaps:1 100.00 66 42.42 9e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_pdb 1pcf_C 97 161 + 65 Gaps:1 100.00 66 42.42 9e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_uniprot_sprot sp|O65155|KELP_ARATH 13 165 + 153 Gaps:18 92.73 165 49.67 3e-36 RNA polymerase II transcriptional coactivator KELP OS Arabidopsis thaliana GN KELP PE 1 SV 1
blastp_uniprot_sprot sp|O65154|KIWI_ARATH 77 158 + 82 Gaps:8 69.16 107 43.24 3e-10 RNA polymerase II transcriptional coactivator KIWI OS Arabidopsis thaliana GN KIWI PE 1 SV 1
blastp_uniprot_sprot sp|Q5R6D0|TCP4_PONAB 98 161 + 64 Gaps:1 51.18 127 43.08 9e-10 Activated RNA polymerase II transcriptional coactivator p15 OS Pongo abelii GN SUB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q4R947|TCP4_MACFA 98 161 + 64 Gaps:1 51.18 127 43.08 9e-10 Activated RNA polymerase II transcriptional coactivator p15 OS Macaca fascicularis GN SUB1 PE 2 SV 1
blastp_uniprot_sprot sp|P53999|TCP4_HUMAN 98 161 + 64 Gaps:1 51.18 127 43.08 9e-10 Activated RNA polymerase II transcriptional coactivator p15 OS Homo sapiens GN SUB1 PE 1 SV 3
blastp_uniprot_sprot sp|Q5ZK63|TCP4_CHICK 98 161 + 64 Gaps:1 51.59 126 41.54 1e-09 Activated RNA polymerase II transcriptional coactivator p15 OS Gallus gallus GN SUB1 PE 2 SV 1
blastp_uniprot_sprot sp|P10978|POLX_TOBAC 188 468 + 281 Gaps:38 20.56 1328 25.64 2e-08 Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS Nicotiana tabacum PE 2 SV 1
blastp_uniprot_sprot sp|P11031|TCP4_MOUSE 98 161 + 64 Gaps:1 51.18 127 41.54 3e-08 Activated RNA polymerase II transcriptional coactivator p15 OS Mus musculus GN Sub1 PE 1 SV 3
blastp_uniprot_sprot sp|Q63396|TCP4_RAT 98 161 + 64 Gaps:1 51.18 127 41.54 3e-08 Activated RNA polymerase II transcriptional coactivator p15 OS Rattus norvegicus GN Sub1 PE 2 SV 3
blastp_uniprot_sprot sp|P87294|TCP4_SCHPO 102 158 + 57 none 41.91 136 38.60 4e-08 Putative RNA polymerase II transcriptional coactivator OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPAC16A10.02 PE 1 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 99 158 60 G3DSA:2.30.31.10 none none IPR009044
Pfam 426 442 17 PF00098 none Zinc knuckle IPR001878
Pfam 100 150 51 PF02229 none Transcriptional Coactivator p15 (PC4) IPR003173
SUPERFAMILY 99 159 61 SSF54447 none none IPR009044
PANTHER 5 257 253 PTHR13215:SF4 none none IPR017415
SUPERFAMILY 414 443 30 SSF57756 none none IPR001878
SMART 426 442 17 SM00343 none zinc finger IPR001878
PANTHER 5 257 253 PTHR13215 none none none
Gene3D 418 443 26 G3DSA:4.10.60.10 none none IPR001878
Pfam 6 60 55 PF08766 none DEK C terminal domain IPR014876
Pfam 278 390 113 PF14227 none gag-polypeptide of LTR copia-type none
Gene3D 4 60 57 G3DSA:1.10.10.60 none none IPR009057
ProSiteProfiles 427 442 16 PS50158 none Zinc finger CCHC-type profile. IPR001878

0 Localization

0 Qtllist

0 Targeting