Protein : Qrob_P0199380.2 Q. robur
Protein Identifier  ? Qrob_P0199380.2 Organism . Name  Quercus robur
Score  26.6 Score Type  egn
Protein Description  (M=13) PTHR11064 - CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 168  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_026629 19 167 + 149 Gaps:7 100.00 144 76.39 2e-69 Nuclear transcription factor Y subunit B-4
blastp_kegg lcl|vvi:100249483 19 167 + 149 Gaps:2 100.00 147 72.11 1e-67 nuclear transcription factor Y subunit B-5-like
blastp_kegg lcl|pop:POPTR_0013s02030g 19 162 + 144 Gaps:3 95.97 149 72.03 1e-65 POPTRDRAFT_894737 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1432450 19 167 + 149 Gaps:9 100.00 158 67.09 5e-65 ccaat-binding transcription factor subunit A putative
blastp_kegg lcl|cic:CICLE_v10003157mg 19 166 + 148 Gaps:8 99.36 157 65.38 4e-64 hypothetical protein
blastp_kegg lcl|cit:102621848 19 166 + 148 Gaps:8 99.36 157 65.38 4e-64 nuclear transcription factor Y subunit B-4-like
blastp_kegg lcl|pop:POPTR_0005s02750g 19 162 + 144 Gaps:13 95.97 149 71.33 4e-63 hypothetical protein
blastp_kegg lcl|fve:101291347 17 167 + 151 Gaps:11 99.35 155 68.83 1e-62 nuclear transcription factor Y subunit B-4-like
blastp_kegg lcl|pxb:103965333 19 162 + 144 Gaps:6 92.00 150 71.74 6e-62 nuclear transcription factor Y subunit B-4
blastp_kegg lcl|sly:101267361 19 158 + 140 Gaps:1 95.21 146 68.35 8e-60 nuclear transcription factor Y subunit B-4-like
blastp_pdb 1n1j_A 22 111 + 90 none 96.77 93 61.11 4e-36 mol:protein length:93 NF-YB
blastp_pdb 2bym_D 27 110 + 84 none 65.62 128 36.90 2e-12 mol:protein length:128 CHRAC-14
blastp_pdb 2bym_B 27 110 + 84 none 65.62 128 36.90 2e-12 mol:protein length:128 CHRAC-14
blastp_pdb 2byk_D 27 110 + 84 none 65.62 128 36.90 2e-12 mol:protein length:128 CHRAC-14
blastp_pdb 2byk_B 27 110 + 84 none 65.62 128 36.90 2e-12 mol:protein length:128 CHRAC-14
blastp_pdb 1jfi_B 27 106 + 80 Gaps:1 44.13 179 30.38 4e-10 mol:protein length:179 Transcription Regulator NC2 beta chain
blastp_uniprot_sprot sp|O04027|NFYB4_ARATH 19 165 + 147 Gaps:8 100.00 139 69.78 4e-59 Nuclear transcription factor Y subunit B-4 OS Arabidopsis thaliana GN NFYB4 PE 1 SV 1
blastp_uniprot_sprot sp|O82248|NFYB5_ARATH 19 128 + 110 Gaps:3 70.62 160 69.03 9e-49 Nuclear transcription factor Y subunit B-5 OS Arabidopsis thaliana GN NFYB5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIT9|NFYB7_ARATH 22 121 + 100 none 46.51 215 64.00 1e-40 Nuclear transcription factor Y subunit B-7 OS Arabidopsis thaliana GN NFYB7 PE 2 SV 1
blastp_uniprot_sprot sp|O23310|NFYB3_ARATH 22 113 + 92 none 57.14 161 66.30 2e-40 Nuclear transcription factor Y subunit B-3 OS Arabidopsis thaliana GN NFYB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FGJ3|NFYB2_ARATH 22 113 + 92 none 48.42 190 67.39 3e-40 Nuclear transcription factor Y subunit B-2 OS Arabidopsis thaliana GN NFYB2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SLG0|NFYB1_ARATH 22 124 + 103 Gaps:4 70.21 141 63.64 4e-40 Nuclear transcription factor Y subunit B-1 OS Arabidopsis thaliana GN NFYB1 PE 1 SV 2
blastp_uniprot_sprot sp|Q67XJ2|NFYBA_ARATH 22 123 + 102 none 57.95 176 58.82 4e-39 Nuclear transcription factor Y subunit B-10 OS Arabidopsis thaliana GN NFYB10 PE 2 SV 1
blastp_uniprot_sprot sp|P25209|NFYB_MAIZE 22 123 + 102 Gaps:3 58.66 179 57.14 2e-38 Nuclear transcription factor Y subunit B OS Zea mays GN NFY2 PE 2 SV 1
blastp_uniprot_sprot sp|Q60EQ4|NFYB3_ORYSJ 22 127 + 106 Gaps:3 58.92 185 55.96 4e-38 Nuclear transcription factor Y subunit B-3 OS Oryza sativa subsp. japonica GN NFYB3 PE 1 SV 2
blastp_uniprot_sprot sp|Q8VYK4|NFYB8_ARATH 22 123 + 102 none 58.96 173 57.84 8e-38 Nuclear transcription factor Y subunit B-8 OS Arabidopsis thaliana GN NFYB8 PE 2 SV 1
rpsblast_cdd gnl|CDD|201453 25 90 + 66 Gaps:1 100.00 65 47.69 2e-19 pfam00808 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone. This family includes archaebacterial histones and histone like transcription factors from eukaryotes.
rpsblast_cdd gnl|CDD|32219 20 100 + 81 Gaps:2 86.81 91 31.65 3e-12 COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics].
rpsblast_cdd gnl|CDD|34751 21 116 + 96 none 64.86 148 29.17 4e-10 COG5150 COG5150 Class 2 transcription repressor NC2 beta subunit (Dr1) [Transcription].
rpsblast_kog gnl|CDD|36087 22 153 + 132 Gaps:2 79.76 168 52.99 3e-43 KOG0869 KOG0869 KOG0869 CCAAT-binding factor subunit A (HAP3) [Transcription].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 19 136 118 G3DSA:1.10.20.10 none none IPR009072
PANTHER 22 134 113 PTHR11064 none none none
PRINTS 54 72 19 PR00615 none CCAAT-binding transcription factor subunit A signature none
PRINTS 92 110 19 PR00615 none CCAAT-binding transcription factor subunit A signature none
PRINTS 73 91 19 PR00615 none CCAAT-binding transcription factor subunit A signature none
Pfam 26 90 65 PF00808 none Histone-like transcription factor (CBF/NF-Y) and archaeal histone IPR003958
SUPERFAMILY 23 141 119 SSF47113 none none IPR009072

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting