Protein : Qrob_P0199220.2 Q. robur
Protein Identifier  ? Qrob_P0199220.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR23430:SF50 - HISTONE H2A (PTHR23430:SF50) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 148  
Kegg Orthology  K11251
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103344589 1 147 + 147 Gaps:3 100.00 148 89.86 1e-85 histone H2A.1-like
blastp_kegg lcl|fve:101312360 1 147 + 147 Gaps:1 98.65 148 85.62 2e-80 probable histone H2A.5-like
blastp_kegg lcl|pper:PRUPE_ppa012864mg 1 135 + 135 Gaps:3 90.07 151 90.44 2e-78 hypothetical protein
blastp_kegg lcl|sly:101250163 3 147 + 145 Gaps:4 99.32 146 84.83 6e-76 HTA6 LeH2A-1 histone H2A.1-like
blastp_kegg lcl|ath:AT5G27670 1 147 + 147 Gaps:3 100.00 150 78.00 2e-75 HTA7 histone H2A 7
blastp_kegg lcl|csv:101212964 8 147 + 140 Gaps:8 97.87 141 89.13 6e-75 probable histone H2A.5-like
blastp_kegg lcl|cmo:103494731 8 147 + 140 Gaps:8 97.87 141 88.41 4e-74 probable histone H2A.5
blastp_kegg lcl|mtr:MTR_7g113160 9 139 + 131 none 90.97 144 84.73 1e-73 Histone H2A
blastp_kegg lcl|vvi:100256203 1 147 + 147 Gaps:10 100.00 137 86.13 4e-72 probable histone H2A.5-like
blastp_kegg lcl|pxb:103965316 22 147 + 126 Gaps:3 86.58 149 87.60 7e-72 histone H2A.1
blastp_pdb 2aro_E 13 136 + 124 Gaps:1 96.90 129 72.00 3e-55 mol:protein length:129 Histone H2A-IV
blastp_pdb 2aro_A 13 136 + 124 Gaps:1 96.90 129 72.00 3e-55 mol:protein length:129 Histone H2A-IV
blastp_pdb 1tzy_E 13 136 + 124 Gaps:1 96.90 129 72.00 3e-55 mol:protein length:129 Histone H2A-IV
blastp_pdb 1tzy_A 13 136 + 124 Gaps:1 96.90 129 72.00 3e-55 mol:protein length:129 Histone H2A-IV
blastp_pdb 1hq3_E 13 136 + 124 Gaps:1 96.90 129 72.00 3e-55 mol:protein length:129 HISTONE H2A-IV
blastp_pdb 1hq3_A 13 136 + 124 Gaps:1 96.90 129 72.00 3e-55 mol:protein length:129 HISTONE H2A-IV
blastp_pdb 1eqz_E 13 136 + 124 Gaps:1 96.90 129 72.00 3e-55 mol:protein length:129 PROTEIN (HISTONE H2A)
blastp_pdb 1eqz_A 13 136 + 124 Gaps:1 96.90 129 72.00 3e-55 mol:protein length:129 PROTEIN (HISTONE H2A)
blastp_pdb 3c9k_E 13 136 + 124 Gaps:1 97.66 128 72.00 3e-55 mol:protein length:128 Histone H2A-IV
blastp_pdb 3c9k_A 13 136 + 124 Gaps:1 97.66 128 72.00 3e-55 mol:protein length:128 Histone H2A-IV
blastp_uniprot_sprot sp|P25469|H2A1_SOLLC 3 147 + 145 Gaps:4 99.32 146 84.83 2e-77 Histone H2A.1 OS Solanum lycopersicum PE 2 SV 1
blastp_uniprot_sprot sp|Q94F49|H2A5_ARATH 1 147 + 147 Gaps:3 100.00 150 78.00 8e-77 Probable histone H2A.5 OS Arabidopsis thaliana GN At5g27670 PE 1 SV 1
blastp_uniprot_sprot sp|Q2HU68|H2A1_MEDTR 19 147 + 129 Gaps:1 87.84 148 83.08 3e-69 Probable histone H2A.1 OS Medicago truncatula GN MtrDRAFT_AC149210g1v1 PE 1 SV 1
blastp_uniprot_sprot sp|P19177|H2A_PETCR 1 147 + 147 Gaps:2 100.00 149 80.54 3e-68 Histone H2A OS Petroselinum crispum PE 2 SV 1
blastp_uniprot_sprot sp|Q9FJE8|H2A7_ARATH 1 147 + 147 Gaps:3 100.00 150 75.33 5e-68 Probable histone H2A.7 OS Arabidopsis thaliana GN At5g59870 PE 1 SV 1
blastp_uniprot_sprot sp|Q43214|H2A6_WHEAT 13 146 + 134 Gaps:5 93.92 148 77.70 7e-67 Protein H2A.6 OS Triticum aestivum GN H2A-3 PE 2 SV 3
blastp_uniprot_sprot sp|Q43213|H2A5_WHEAT 13 140 + 128 Gaps:2 86.90 145 82.54 2e-66 Protein H2A.5 OS Triticum aestivum GN H2A-2 PE 2 SV 3
blastp_uniprot_sprot sp|P02275|H2A1_WHEAT 13 136 + 124 Gaps:2 83.56 146 84.43 8e-66 Histone H2A.1 OS Triticum aestivum GN H2A-9 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LZ46|H2A4_ARATH 19 147 + 129 Gaps:4 86.93 153 77.44 2e-65 Probable histone H2A.4 OS Arabidopsis thaliana GN At5g02560 PE 1 SV 1
blastp_uniprot_sprot sp|P40281|H2A2_PEA 22 147 + 126 Gaps:1 85.23 149 81.10 2e-65 Histone H2A.2 OS Pisum sativum PE 2 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 25 98 74 PF00125 none Core histone H2A/H2B/H3/H4 IPR007125
SUPERFAMILY 14 130 117 SSF47113 none none IPR009072
PANTHER 7 147 141 PTHR23430 none none none
PRINTS 50 65 16 PR00620 none Histone H2A signature IPR002119
PRINTS 79 93 15 PR00620 none Histone H2A signature IPR002119
PRINTS 65 78 14 PR00620 none Histone H2A signature IPR002119
PRINTS 21 43 23 PR00620 none Histone H2A signature IPR002119
PRINTS 107 125 19 PR00620 none Histone H2A signature IPR002119
Gene3D 14 129 116 G3DSA:1.10.20.10 none none IPR009072
ProSitePatterns 29 35 7 PS00046 none Histone H2A signature. IPR002119
PANTHER 7 147 141 PTHR23430:SF50 none none none
SMART 10 130 121 SM00414 none Histone 2A IPR002119

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting