Protein : Qrob_P0196040.2 Q. robur
Protein Identifier  ? Qrob_P0196040.2 Organism . Name  Quercus robur
Score  93.1 Score Type  egn
Protein Description  (M=2) K01889 - phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Code Enzyme  EC:6.1.1.20
Gene Prediction Quality  validated Protein length 

Sequence

Length: 499  
Kegg Orthology  K01889
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0 Synonyms

9 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0000049 tRNA binding Interacting selectively and non-covalently with transfer RNA.
GO:0043039 tRNA aminoacylation The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules.
GO:0004826 phenylalanine-tRNA ligase activity Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe).
GO:0006432 phenylalanyl-tRNA aminoacylation The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103335652 1 498 + 498 Gaps:11 100.00 487 82.55 0.0 probable phenylalanine--tRNA ligase alpha subunit
blastp_kegg lcl|pvu:PHAVU_011G045200g 1 498 + 498 Gaps:11 97.40 500 81.52 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_006889 1 498 + 498 Gaps:11 99.80 488 81.31 0.0 Phenylalanyl-tRNA synthetase / phenylalanine--tRNA ligase putative isoform 1
blastp_kegg lcl|pxb:103963135 1 498 + 498 Gaps:11 100.00 487 81.93 0.0 probable phenylalanine--tRNA ligase alpha subunit
blastp_kegg lcl|mdm:103440406 1 498 + 498 Gaps:11 100.00 487 81.72 0.0 probable phenylalanine--tRNA ligase alpha subunit
blastp_kegg lcl|gmx:100777795 1 498 + 498 Gaps:11 99.80 488 81.11 0.0 probable phenylalanine--tRNA ligase alpha subunit-like
blastp_kegg lcl|cam:101499922 1 498 + 498 Gaps:11 99.80 488 79.67 0.0 probable phenylalanine--tRNA ligase alpha subunit-like
blastp_kegg lcl|cam:101505052 1 498 + 498 Gaps:11 99.80 488 80.08 0.0 probable phenylalanine--tRNA ligase alpha subunit-like
blastp_kegg lcl|gmx:100792325 1 498 + 498 Gaps:11 99.80 488 80.08 0.0 probable phenylalanyl-tRNA synthetase alpha chain-like
blastp_kegg lcl|aly:ARALYDRAFT_912388 1 498 + 498 Gaps:13 100.00 485 80.21 0.0 hypothetical protein
blastp_pdb 3l4g_O 18 496 + 479 Gaps:21 93.31 508 56.96 0.0 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3l4g_M 18 496 + 479 Gaps:21 93.31 508 56.96 0.0 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3l4g_K 18 496 + 479 Gaps:21 93.31 508 56.96 0.0 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3l4g_I 18 496 + 479 Gaps:21 93.31 508 56.96 0.0 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3l4g_G 18 496 + 479 Gaps:21 93.31 508 56.96 0.0 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3l4g_E 18 496 + 479 Gaps:21 93.31 508 56.96 0.0 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3l4g_C 18 496 + 479 Gaps:21 93.31 508 56.96 0.0 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3l4g_A 18 496 + 479 Gaps:21 93.31 508 56.96 0.0 mol:protein length:508 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3teh_A 144 485 + 342 Gaps:65 94.00 350 35.56 4e-34 mol:protein length:350 Phenylalanyl-tRNA synthetase alpha chain
blastp_pdb 3hfz_A 144 485 + 342 Gaps:65 94.00 350 35.56 4e-34 mol:protein length:350 Phenylalanyl-tRNA synthetase alpha chain
blastp_uniprot_sprot sp|Q9T034|SYFA_ARATH 1 498 + 498 Gaps:13 100.00 485 78.97 0.0 Probable phenylalanine--tRNA ligase alpha subunit OS Arabidopsis thaliana GN At4g39280 PE 2 SV 3
blastp_uniprot_sprot sp|Q505J8|SYFA_RAT 1 498 + 498 Gaps:25 97.83 508 55.73 0.0 Phenylalanine--tRNA ligase alpha subunit OS Rattus norvegicus GN Farsa PE 1 SV 1
blastp_uniprot_sprot sp|Q7SYV0|SYFAB_XENLA 1 496 + 496 Gaps:22 98.60 499 55.89 0.0 Phenylalanine--tRNA ligase alpha subunit B OS Xenopus laevis GN farsa-b PE 2 SV 1
blastp_uniprot_sprot sp|Q1JPX3|SYFA_DANRE 4 496 + 493 Gaps:21 98.19 497 56.56 0.0 Phenylalanine--tRNA ligase alpha subunit OS Danio rerio GN farsa PE 2 SV 2
blastp_uniprot_sprot sp|Q8C0C7|SYFA_MOUSE 18 498 + 481 Gaps:21 93.70 508 56.72 0.0 Phenylalanine--tRNA ligase alpha subunit OS Mus musculus GN Farsa PE 2 SV 1
blastp_uniprot_sprot sp|Q6AZG6|SYFAA_XENLA 18 496 + 479 Gaps:23 95.18 498 57.81 0.0 Phenylalanine--tRNA ligase alpha subunit A OS Xenopus laevis GN farsa-a PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y285|SYFA_HUMAN 18 496 + 479 Gaps:21 93.31 508 56.96 0.0 Phenylalanine--tRNA ligase alpha subunit OS Homo sapiens GN FARSA PE 1 SV 3
blastp_uniprot_sprot sp|Q5RFA2|SYFA_PONAB 18 496 + 479 Gaps:21 93.31 508 56.75 0.0 Phenylalanine--tRNA ligase alpha subunit OS Pongo abelii GN FARSA PE 2 SV 1
blastp_uniprot_sprot sp|Q9W3J5|SYFA_DROME 4 496 + 493 Gaps:20 98.19 498 54.40 6e-170 Probable phenylalanine--tRNA ligase alpha subunit OS Drosophila melanogaster GN CG2263 PE 2 SV 1
blastp_uniprot_sprot sp|P15625|SYFA_YEAST 6 496 + 491 Gaps:27 97.42 503 49.59 2e-159 Phenylalanine--tRNA ligase alpha subunit OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN FRS2 PE 1 SV 3

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 307 496 190 PTHR11538:SF15 none none none
Gene3D 133 490 358 G3DSA:3.30.930.10 none none none
TIGRFAM 175 490 316 TIGR00468 "KEGG:00970+6.1.1.20" pheS: phenylalanine--tRNA ligase, alpha subunit IPR004529
PANTHER 307 496 190 PTHR11538 none none none
ProSiteProfiles 226 492 267 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
PANTHER 22 290 269 PTHR11538 none none none
Pfam 202 484 283 PF01409 "KEGG:00970+6.1.1.20" tRNA synthetases class II core domain (F) IPR002319
PANTHER 22 290 269 PTHR11538:SF15 none none none
SUPERFAMILY 219 484 266 SSF55681 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7

0 Targeting