Protein : Qrob_P0190770.2 Q. robur
Protein Identifier  ? Qrob_P0190770.2 Organism . Name  Quercus robur
Protein Description  (M=1) KOG1151//KOG1883//KOG3561//KOG3598//KOG4274 - Tousled-like protein kinase [Signal transduction mechanisms]. // Cofactor required for Sp1 transcriptional activation subunit 3 [Transcription]. // Aryl-hydrocarbon receptor nuclear translocator [Transcription]. // Thyroid hormone receptor-associated protein complex subunit TRAP230 [Transcription]. // Positive cofactor 2 (PC2) subunit of a multiprotein coactivator of RNA polymerase II [Transcription]. Alias (in v1)  Qrob_P0503010.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 937  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0009725 response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102620318 14 936 + 923 Gaps:26 100.00 899 87.54 0.0 auxin response factor 6-like
blastp_kegg lcl|cic:CICLE_v10014198mg 14 936 + 923 Gaps:26 100.00 899 87.43 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_029410 14 936 + 923 Gaps:26 100.00 899 88.10 0.0 Auxin response factor 6 isoform 1
blastp_kegg lcl|vvi:100242923 14 936 + 923 Gaps:19 100.00 908 86.34 0.0 auxin response factor 6-like
blastp_kegg lcl|pper:PRUPE_ppa001179mg 14 936 + 923 Gaps:40 100.00 887 88.39 0.0 hypothetical protein
blastp_kegg lcl|pmum:103325164 14 936 + 923 Gaps:38 100.00 889 87.74 0.0 auxin response factor 6
blastp_kegg lcl|pxb:103966082 14 936 + 923 Gaps:34 100.00 893 86.11 0.0 auxin response factor 6-like
blastp_kegg lcl|pxb:103951320 14 936 + 923 Gaps:34 100.00 893 85.89 0.0 auxin response factor 6
blastp_kegg lcl|mdm:103435178 14 936 + 923 Gaps:36 100.00 895 84.69 0.0 ARF2 auxin response factor 6-like
blastp_kegg lcl|pop:POPTR_0011s09450g 14 935 + 922 Gaps:44 99.56 914 81.43 0.0 POPTRDRAFT_727995 auxin response factor 6 family protein
blastp_pdb 1wid_A 140 226 + 87 none 66.92 130 34.48 4e-07 mol:protein length:130 DNA-binding protein RAV1
blastp_uniprot_sprot sp|Q6H6V4|ARFF_ORYSJ 22 936 + 915 Gaps:28 98.35 908 69.09 0.0 Auxin response factor 6 OS Oryza sativa subsp. japonica GN ARF6 PE 1 SV 1
blastp_uniprot_sprot sp|A2X1A1|ARFF_ORYSI 22 936 + 915 Gaps:28 98.35 908 69.09 0.0 Auxin response factor 6 OS Oryza sativa subsp. indica GN ARF6 PE 3 SV 1
blastp_uniprot_sprot sp|Q653U3|ARFQ_ORYSJ 14 936 + 923 Gaps:30 100.00 917 67.94 0.0 Auxin response factor 17 OS Oryza sativa subsp. japonica GN ARF17 PE 2 SV 1
blastp_uniprot_sprot sp|A2YG67|ARFQ_ORYSI 14 936 + 923 Gaps:30 100.00 917 67.94 0.0 Auxin response factor 17 OS Oryza sativa subsp. indica GN ARF17 PE 3 SV 1
blastp_uniprot_sprot sp|Q2QM84|ARFY_ORYSJ 27 936 + 910 Gaps:43 98.00 899 65.72 0.0 Auxin response factor 25 OS Oryza sativa subsp. japonica GN ARF25 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FGV1|ARFH_ARATH 14 895 + 882 Gaps:113 98.27 811 63.11 0.0 Auxin response factor 8 OS Arabidopsis thaliana GN ARF8 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZTX8|ARFF_ARATH 14 497 + 484 Gaps:11 51.66 935 88.41 0.0 Auxin response factor 6 OS Arabidopsis thaliana GN ARF6 PE 1 SV 2
blastp_uniprot_sprot sp|Q258Y5|ARFL_ORYSI 30 895 + 866 Gaps:25 70.96 816 77.55 0.0 Auxin response factor 12 OS Oryza sativa subsp. indica GN ARF12 PE 3 SV 1
blastp_uniprot_sprot sp|Q0J951|ARFL_ORYSJ 30 452 + 423 Gaps:8 50.98 818 83.93 0.0 Auxin response factor 12 OS Oryza sativa subsp. japonica GN ARF12 PE 2 SV 1
blastp_uniprot_sprot sp|A3B9A0|ARFP_ORYSJ 18 914 + 897 Gaps:37 64.74 1055 57.83 0.0 Auxin response factor 16 OS Oryza sativa subsp. japonica GN ARF16 PE 2 SV 1
rpsblast_cdd gnl|CDD|191545 266 349 + 84 Gaps:1 100.00 83 67.47 8e-39 pfam06507 Auxin_resp Auxin response factor. A conserved region of auxin-responsive transcription factors.
rpsblast_cdd gnl|CDD|198087 140 241 + 102 Gaps:6 100.00 96 39.58 1e-22 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.
rpsblast_cdd gnl|CDD|202217 140 242 + 103 Gaps:6 100.00 97 35.05 3e-22 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.
rpsblast_cdd gnl|CDD|202200 743 895 + 153 Gaps:35 94.68 188 25.84 1e-21 pfam02309 AUX_IAA AUX/IAA family. Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.
rpsblast_cdd gnl|CDD|197383 139 240 + 102 Gaps:7 98.98 98 30.93 1e-18 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.
rpsblast_cdd gnl|CDD|204310 426 643 + 218 Gaps:69 32.96 804 41.51 5e-14 pfam09770 PAT1 Topoisomerase II-associated protein PAT1. Members of this family are necessary for accurate chromosome transmission during cell division.
rpsblast_cdd gnl|CDD|205952 458 583 + 126 Gaps:56 18.41 820 36.42 3e-11 pfam13779 DUF4175 Domain of unknown function (DUF4175).
rpsblast_cdd gnl|CDD|150314 421 636 + 216 Gaps:45 45.05 768 30.92 2e-10 pfam09606 Med15 ARC105 or Med15 subunit of Mediator complex non-fungal. The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition Med15 is a critical transducer of gene activation signals that control early metazoan development.
rpsblast_cdd gnl|CDD|151935 437 615 + 179 Gaps:58 41.60 476 47.47 2e-08 pfam11498 Activator_LAG-3 Transcriptional activator LAG-3. The C.elegans Notch pathway involved in the control of growth differentiation and patterning in animal development relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein LAG-1.

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 11 438 428 PTHR31384 none none none
PANTHER 491 929 439 PTHR31384 none none none
SUPERFAMILY 125 269 145 SSF101936 none none IPR015300
SMART 140 242 103 SM01019 none B3 DNA binding domain IPR003340
SUPERFAMILY 795 878 84 SSF54277 none none none
Gene3D 133 255 123 G3DSA:2.40.330.10 none none IPR015300
Pfam 802 894 93 PF02309 none AUX/IAA family IPR003311
PANTHER 11 438 428 PTHR31384:SF3 none none none
ProSiteProfiles 140 242 103 PS50863 none B3 DNA-binding domain profile. IPR003340
Pfam 140 241 102 PF02362 none B3 DNA binding domain IPR003340
Coils 544 576 33 Coil none none none
PANTHER 491 929 439 PTHR31384:SF3 none none none
ProSiteProfiles 803 887 85 PS51745 none PB1 domain profile. IPR000270
Pfam 266 349 84 PF06507 none Auxin response factor IPR010525

0 Localization

0 Qtllist

0 Targeting