Blast Analysis : gnl|CDD|198087

Analysis  rpsblast_cdd Start  140
End  241 Strand  +
Length  102 Note  Gaps:6
Hit Coverage  100.00 Hit Length  96
Hit Pident  39.58 E Val  1e-22
Hit Description  smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations. Hit Pcons  12.50
Name  Qrob_P0190770.2
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1 Protein

Protein Identifier
Organism . Name 		Score Score Type Protein Description Alias (in v1) Code Enzyme Gene Prediction Quality
Qrob_P0190770.2 Quercus robur     (M=1) KOG1151//KOG1883//KOG3561//KOG3598//KOG4274 - Tousled-like protein kinase [Signal transduction mechanisms]. // Cofactor required for Sp1 transcriptional activation subunit 3 [Transcription]. // Aryl-hydrocarbon receptor nuclear translocator [Transcription]. // Thyroid hormone receptor-associated protein complex subunit TRAP230 [Transcription]. // Positive cofactor 2 (PC2) subunit of a multiprotein coactivator of RNA polymerase II [Transcription]. Qrob_P0503010.1   manual_v1