3 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0003677 | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| GO:0006265 | DNA topological change | The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. |
| GO:0003917 | DNA topoisomerase type I activity | Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle. |
13 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|pmum:103327049 | 1 | 110 | + | 110 | Gaps:13 | 13.52 | 910 | 77.24 | 2e-55 | DNA topoisomerase 3-alpha |
| blastp_kegg | lcl|fve:101293143 | 1 | 110 | + | 110 | Gaps:13 | 13.55 | 908 | 73.98 | 1e-53 | DNA topoisomerase 3-alpha-like |
| blastp_kegg | lcl|pxb:103946776 | 1 | 110 | + | 110 | Gaps:13 | 12.65 | 972 | 73.98 | 6e-53 | DNA topoisomerase 3-alpha |
| blastp_kegg | lcl|mdm:103400273 | 5 | 110 | + | 106 | Gaps:13 | 48.97 | 243 | 71.43 | 9e-53 | DNA topoisomerase 3-alpha-like |
| blastp_kegg | lcl|cam:101494498 | 1 | 110 | + | 110 | Gaps:13 | 13.37 | 920 | 73.98 | 6e-52 | DNA topoisomerase 3-alpha-like |
| blastp_kegg | lcl|mtr:MTR_3g096630 | 1 | 110 | + | 110 | Gaps:13 | 28.47 | 432 | 70.73 | 7e-50 | DNA topoisomerase |
| blastp_kegg | lcl|gmx:100818971 | 1 | 110 | + | 110 | Gaps:13 | 13.47 | 913 | 68.29 | 3e-46 | TOP3A topoisomerase (DNA) III alpha |
| blastp_kegg | lcl|vvi:100248256 | 1 | 110 | + | 110 | Gaps:13 | 13.46 | 914 | 69.11 | 4e-46 | DNA topoisomerase 3-alpha-like |
| blastp_kegg | lcl|tcc:TCM_001553 | 1 | 110 | + | 110 | Gaps:13 | 13.46 | 914 | 66.67 | 4e-45 | Topoisomerase 3alpha isoform 1 |
| blastp_kegg | lcl|pop:POPTR_0005s06810g | 1 | 110 | + | 110 | Gaps:13 | 13.52 | 910 | 65.04 | 1e-44 | POPTRDRAFT_861019 hypothetical protein |
| blastp_uniprot_sprot | sp|O70157|TOP3A_MOUSE | 1 | 109 | + | 109 | Gaps:16 | 12.26 | 1003 | 34.15 | 7e-12 | DNA topoisomerase 3-alpha OS Mus musculus GN Top3a PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q13472|TOP3A_HUMAN | 1 | 109 | + | 109 | Gaps:16 | 12.29 | 1001 | 33.33 | 3e-11 | DNA topoisomerase 3-alpha OS Homo sapiens GN TOP3A PE 1 SV 1 |
| rpsblast_kog | gnl|CDD|37167 | 1 | 110 | + | 110 | Gaps:25 | 11.21 | 758 | 25.88 | 7e-09 | KOG1956 KOG1956 KOG1956 DNA topoisomerase III alpha [Replication recombination and repair]. |
2 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2002_QTL13_peak_Bud_burst_3P | Qrob_Chr10 | 10 | s_1B1AG7_637 | s_1A3A1N_709 | 19,44 | 0 | 49,44 | lod | 3 | 5,6 |
| Champenoux_2015_nPriLBD_3P | Qrob_Chr10 | 10 | v_15000_157 | v_15000_310 | 15,68 | 15,9 | 15,91 | lod | 2.4 | 5.5 |
