Protein : Qrob_P0185720.2 Q. robur
Protein Identifier  ? Qrob_P0185720.2 Organism . Name  Quercus robur
Score  33.1 Score Type  egn
Protein Description  (M=5) K00600 - glycine hydroxymethyltransferase [EC:2.1.2.1] Code Enzyme  EC:2.1.2.1
Gene Prediction Quality  validated Protein length 

Sequence

Length: 247  
Kegg Orthology  K00600
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0016740 transferase activity Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103344066 8 232 + 225 Gaps:37 90.82 207 83.51 2e-103 serine hydroxymethyltransferase 3 chloroplastic-like
blastp_kegg lcl|pmum:103343996 8 232 + 225 Gaps:37 41.23 456 83.51 5e-100 serine hydroxymethyltransferase 3 chloroplastic-like
blastp_kegg lcl|tcc:TCM_037262 8 234 + 227 Gaps:37 36.33 523 84.21 5e-100 Serine hydroxymethyltransferase 3 isoform 1
blastp_kegg lcl|cit:102610283 8 232 + 225 Gaps:37 35.54 529 84.04 1e-99 serine hydroxymethyltransferase 3 chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10019689mg 8 232 + 225 Gaps:37 35.54 529 83.51 8e-99 hypothetical protein
blastp_kegg lcl|sly:101263138 8 232 + 225 Gaps:37 35.88 524 83.51 1e-98 serine hydroxymethyltransferase mitochondrial-like
blastp_kegg lcl|sot:102605665 8 232 + 225 Gaps:37 35.88 524 83.51 2e-98 serine hydroxymethyltransferase 3 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa004082mg 8 232 + 225 Gaps:37 35.40 531 82.98 3e-98 hypothetical protein
blastp_kegg lcl|cmo:103493017 8 234 + 227 Gaps:37 35.98 528 82.63 1e-97 serine hydroxymethyltransferase 3 chloroplastic
blastp_kegg lcl|sly:101267301 8 232 + 225 Gaps:37 35.67 527 82.98 1e-97 serine hydroxymethyltransferase mitochondrial-like
blastp_pdb 1rvy_B 9 201 + 193 Gaps:41 33.13 483 58.75 7e-54 mol:protein length:483 Serine hydroxymethyltransferase cytosolic
blastp_pdb 1rvy_A 9 201 + 193 Gaps:41 33.13 483 58.75 7e-54 mol:protein length:483 Serine hydroxymethyltransferase cytosolic
blastp_pdb 1rvu_B 9 201 + 193 Gaps:41 33.13 483 58.75 7e-54 mol:protein length:483 Serine hydroxymethyltransferase cytosolic
blastp_pdb 1rvu_A 9 201 + 193 Gaps:41 33.13 483 58.75 7e-54 mol:protein length:483 Serine hydroxymethyltransferase cytosolic
blastp_pdb 1cj0_B 9 201 + 193 Gaps:41 34.04 470 58.75 7e-54 mol:protein length:470 PROTEIN (SERINE HYDROXYMETHYLTRANSFERASE)
blastp_pdb 1cj0_A 9 201 + 193 Gaps:41 34.04 470 58.75 7e-54 mol:protein length:470 PROTEIN (SERINE HYDROXYMETHYLTRANSFERASE)
blastp_pdb 1ls3_D 9 201 + 193 Gaps:41 33.13 483 58.75 7e-54 mol:protein length:483 Serine Hydroxymethyltransferase
blastp_pdb 1ls3_C 9 201 + 193 Gaps:41 33.13 483 58.75 7e-54 mol:protein length:483 Serine Hydroxymethyltransferase
blastp_pdb 1ls3_B 9 201 + 193 Gaps:41 33.13 483 58.75 7e-54 mol:protein length:483 Serine Hydroxymethyltransferase
blastp_pdb 1ls3_A 9 201 + 193 Gaps:41 33.13 483 58.75 7e-54 mol:protein length:483 Serine Hydroxymethyltransferase
blastp_uniprot_sprot sp|Q94JQ3|GLYP3_ARATH 8 232 + 225 Gaps:37 35.54 529 77.66 4e-93 Serine hydroxymethyltransferase 3 chloroplastic OS Arabidopsis thaliana GN SHM3 PE 1 SV 2
blastp_uniprot_sprot sp|P07511|GLYC_RABIT 9 201 + 193 Gaps:41 33.06 484 58.75 3e-53 Serine hydroxymethyltransferase cytosolic OS Oryctolagus cuniculus GN SHMT1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SZJ5|GLYM1_ARATH 17 215 + 199 Gaps:37 31.33 517 56.79 6e-53 Serine hydroxymethyltransferase 1 mitochondrial OS Arabidopsis thaliana GN SHM1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5E9P9|GLYC_BOVIN 9 222 + 214 Gaps:42 37.60 484 52.75 1e-52 Serine hydroxymethyltransferase cytosolic OS Bos taurus GN SHMT1 PE 2 SV 3
blastp_uniprot_sprot sp|Q94C74|GLYM2_ARATH 17 215 + 199 Gaps:37 31.33 517 56.79 1e-52 Serine hydroxymethyltransferase 2 mitochondrial OS Arabidopsis thaliana GN SHM2 PE 1 SV 2
blastp_uniprot_sprot sp|P35623|GLYC_SHEEP 9 222 + 214 Gaps:42 37.60 484 52.75 1e-52 Serine hydroxymethyltransferase cytosolic OS Ovis aries GN SHMT1 PE 1 SV 3
blastp_uniprot_sprot sp|P34898|GLYC_NEUCR 17 229 + 213 Gaps:39 37.08 480 55.62 2e-52 Serine hydroxymethyltransferase cytosolic OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN for PE 3 SV 2
blastp_uniprot_sprot sp|P50433|GLYM_SOLTU 17 215 + 199 Gaps:37 31.27 518 56.79 5e-52 Serine hydroxymethyltransferase mitochondrial OS Solanum tuberosum PE 2 SV 1
blastp_uniprot_sprot sp|P14519|GLYM_RABIT 11 218 + 208 Gaps:43 34.33 504 57.23 8e-52 Serine hydroxymethyltransferase mitochondrial OS Oryctolagus cuniculus GN SHMT2 PE 1 SV 2
blastp_uniprot_sprot sp|P34899|GLYM_PEA 17 223 + 207 Gaps:37 32.82 518 53.53 2e-51 Serine hydroxymethyltransferase mitochondrial OS Pisum sativum PE 1 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 123 123 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 11 123 113 G3DSA:3.90.1150.10 none none IPR015422
Phobius 124 145 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 159 222 64 PTHR11680:SF4 none none none
PANTHER 13 121 109 PTHR11680:SF4 none none none
Phobius 146 246 101 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 16 122 107 PF00464 "KEGG:00260+2.1.2.1","KEGG:00460+2.1.2.1","KEGG:00630+2.1.2.1","KEGG:00670+2.1.2.1","KEGG:00680+2.1.2.1","MetaCyc:PWY-1622","MetaCyc:PWY-181","MetaCyc:PWY-2161","MetaCyc:PWY-2201","MetaCyc:PWY-3661","MetaCyc:PWY-3661-1","MetaCyc:PWY-3841","MetaCyc:PWY-5497","UniPathway:UPA00193","UniPathway:UPA00288" Serine hydroxymethyltransferase IPR001085
Pfam 158 192 35 PF00464 "KEGG:00260+2.1.2.1","KEGG:00460+2.1.2.1","KEGG:00630+2.1.2.1","KEGG:00670+2.1.2.1","KEGG:00680+2.1.2.1","MetaCyc:PWY-1622","MetaCyc:PWY-181","MetaCyc:PWY-2161","MetaCyc:PWY-2201","MetaCyc:PWY-3661","MetaCyc:PWY-3661-1","MetaCyc:PWY-3841","MetaCyc:PWY-5497","UniPathway:UPA00193","UniPathway:UPA00288" Serine hydroxymethyltransferase IPR001085
SUPERFAMILY 16 116 101 SSF53383 none none IPR015424
SUPERFAMILY 154 209 56 SSF53383 none none IPR015424
PANTHER 159 222 64 PTHR11680 "KEGG:00260+2.1.2.1","KEGG:00460+2.1.2.1","KEGG:00630+2.1.2.1","KEGG:00670+2.1.2.1","KEGG:00680+2.1.2.1","MetaCyc:PWY-1622","MetaCyc:PWY-181","MetaCyc:PWY-2161","MetaCyc:PWY-2201","MetaCyc:PWY-3661","MetaCyc:PWY-3661-1","MetaCyc:PWY-3841","MetaCyc:PWY-5497","UniPathway:UPA00193","UniPathway:UPA00288";signature_desc=SERINE HYDROXYMETHYLTRANSFERASE none IPR001085
PANTHER 13 121 109 PTHR11680 "KEGG:00260+2.1.2.1","KEGG:00460+2.1.2.1","KEGG:00630+2.1.2.1","KEGG:00670+2.1.2.1","KEGG:00680+2.1.2.1","MetaCyc:PWY-1622","MetaCyc:PWY-181","MetaCyc:PWY-2161","MetaCyc:PWY-2201","MetaCyc:PWY-3661","MetaCyc:PWY-3661-1","MetaCyc:PWY-3841","MetaCyc:PWY-5497","UniPathway:UPA00193","UniPathway:UPA00288";signature_desc=SERINE HYDROXYMETHYLTRANSFERASE none IPR001085
Gene3D 158 218 61 G3DSA:3.90.1150.10 none none IPR015422

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting