Protein : Qrob_P0180840.2 Q. robur
Protein Identifier  ? Qrob_P0180840.2 Organism . Name  Quercus robur
Score  5.1 Score Type  egn
Protein Description  (M=5) K03553 - recombination protein RecA Code Enzyme  EC:3.6.1.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 297  
Kegg Orthology  K03553
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0008094 DNA-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
GO:0006259 DNA metabolic process Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO:0003697 single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.
GO:0009432 SOS response An error-prone process for repairing damaged microbial DNA.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10005129mg 1 285 + 285 Gaps:72 90.10 394 53.52 4e-117 hypothetical protein
blastp_kegg lcl|pop:POPTR_0006s04660g 14 279 + 266 Gaps:67 87.40 381 57.36 5e-116 hypothetical protein
blastp_kegg lcl|pop:POPTR_0016s05810g 14 288 + 275 Gaps:67 75.83 451 57.31 8e-116 POPTRDRAFT_255915 hypothetical protein
blastp_kegg lcl|cit:102612122 1 285 + 285 Gaps:79 90.05 402 52.21 2e-113 DNA repair protein recA homolog 2 mitochondrial-like
blastp_kegg lcl|gmx:100777423 1 283 + 283 Gaps:72 91.97 386 45.92 7e-88 DNA repair protein recA homolog 2 mitochondrial-like
blastp_kegg lcl|tcc:TCM_028130 5 286 + 282 Gaps:8 74.56 397 72.97 3e-86 DNA repair protein recA
blastp_kegg lcl|vvi:100248558 1 285 + 285 Gaps:8 73.87 398 71.09 1e-85 DNA repair protein recA homolog 2 mitochondrial-like
blastp_kegg lcl|pper:PRUPE_ppa016295mg 25 175 + 151 Gaps:8 61.39 259 80.50 2e-82 hypothetical protein
blastp_kegg lcl|zma:100276540 6 279 + 274 Gaps:72 84.60 409 43.35 6e-82 TIDP3078 LOC100276540
blastp_kegg lcl|mtr:MTR_7g090880 1 281 + 281 Gaps:9 73.35 394 67.13 2e-81 RecA
blastp_pdb 2zrg_A 25 274 + 250 Gaps:74 91.12 349 32.70 5e-51 mol:protein length:349 Protein recA
blastp_pdb 2zrf_A 25 274 + 250 Gaps:74 91.12 349 32.70 5e-51 mol:protein length:349 Protein recA
blastp_pdb 2zre_A 25 274 + 250 Gaps:74 91.12 349 32.70 5e-51 mol:protein length:349 Protein recA
blastp_pdb 2zrd_A 25 274 + 250 Gaps:74 91.12 349 32.70 5e-51 mol:protein length:349 Protein recA
blastp_pdb 2zrc_A 25 274 + 250 Gaps:74 91.12 349 32.70 5e-51 mol:protein length:349 Protein recA
blastp_pdb 2zrb_A 25 274 + 250 Gaps:74 91.12 349 32.70 5e-51 mol:protein length:349 Protein recA
blastp_pdb 2zra_A 25 274 + 250 Gaps:74 91.12 349 32.70 5e-51 mol:protein length:349 Protein recA
blastp_pdb 2zr9_A 25 274 + 250 Gaps:74 91.12 349 32.70 5e-51 mol:protein length:349 Protein recA
blastp_pdb 2zr0_A 25 274 + 250 Gaps:74 91.12 349 32.70 5e-51 mol:protein length:349 Protein recA
blastp_pdb 2zrp_A 25 274 + 250 Gaps:74 91.12 349 32.70 6e-51 mol:protein length:349 Protein recA
blastp_uniprot_sprot sp|Q8RY99|RECAM_ARATH 5 284 + 280 Gaps:8 75.32 389 64.51 1e-76 DNA repair protein recA homolog 2 mitochondrial OS Arabidopsis thaliana GN At3g10140 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZUP2|RECA3_ARATH 27 268 + 242 Gaps:71 72.79 430 39.94 3e-63 DNA repair protein recA homolog 3 mitochondrial OS Arabidopsis thaliana GN At2g19490 PE 2 SV 2
blastp_uniprot_sprot sp|Q89I84|RECA_BRADU 29 282 + 254 Gaps:69 89.23 362 36.22 9e-55 Protein RecA OS Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|C3MD93|RECA_RHISN 20 280 + 261 Gaps:70 91.14 361 36.47 1e-53 Protein RecA OS Rhizobium sp. (strain NGR234) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|C1D4J2|RECA_LARHH 27 274 + 248 Gaps:69 89.55 354 35.65 1e-53 Protein RecA OS Laribacter hongkongensis (strain HLHK9) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|A6X0E8|RECA_OCHA4 29 280 + 252 Gaps:79 88.92 361 38.01 2e-53 Protein RecA OS Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|C1B381|RECA_RHOOB 25 274 + 250 Gaps:74 91.38 348 34.91 3e-53 Protein RecA OS Rhodococcus opacus (strain B4) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|P65976|RECA_BRUSU 20 280 + 261 Gaps:70 91.14 361 36.78 3e-53 Protein RecA OS Brucella suis biovar 1 (strain 1330) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|P65975|RECA_BRUME 20 280 + 261 Gaps:70 91.14 361 36.78 3e-53 Protein RecA OS Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|C0RJG9|RECA_BRUMB 20 280 + 261 Gaps:70 91.14 361 36.78 3e-53 Protein RecA OS Brucella melitensis biotype 2 (strain ATCC 23457) GN recA PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 171 229 59 PS50163 none RecA family profile 2. IPR020587
Gene3D 60 166 107 G3DSA:3.40.50.300 none none IPR027417
PANTHER 28 245 218 PTHR22942 none none none
SUPERFAMILY 30 166 137 SSF52540 none none IPR027417
PRINTS 118 147 30 PR00142 none RecA protein signature IPR013765
PRINTS 152 181 30 PR00142 none RecA protein signature IPR013765
PANTHER 28 245 218 PTHR22942:SF28 none none none
SUPERFAMILY 228 279 52 SSF54752 none none IPR023400
Gene3D 227 279 53 G3DSA:3.30.250.10 none none IPR023400
Pfam 175 276 102 PF00154 none recA bacterial DNA recombination protein IPR013765
Pfam 32 172 141 PF00154 none recA bacterial DNA recombination protein IPR013765
ProSiteProfiles 60 156 97 PS50162 none RecA family profile 1. IPR020588

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting