Protein : Qrob_P0180590.2 Q. robur
Protein Identifier  ? Qrob_P0180590.2 Organism . Name  Quercus robur
Score  4.0 Score Type  egn
Protein Description  (M=5) K03553 - recombination protein RecA Code Enzyme  EC:3.6.1.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 294  
Kegg Orthology  K03553
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0008094 DNA-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
GO:0003697 single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.
GO:0009432 SOS response An error-prone process for repairing damaged microbial DNA.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100248558 28 282 + 255 Gaps:37 73.62 398 64.16 2e-93 DNA repair protein recA homolog 2 mitochondrial-like
blastp_kegg lcl|cic:CICLE_v10005129mg 32 282 + 251 Gaps:1 58.38 394 72.17 2e-90 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa016295mg 51 209 + 159 none 61.39 259 84.28 5e-90 hypothetical protein
blastp_kegg lcl|cit:102612122 36 282 + 247 Gaps:1 56.22 402 72.12 1e-88 DNA repair protein recA homolog 2 mitochondrial-like
blastp_kegg lcl|pmum:103342440 51 282 + 232 none 56.04 389 77.06 2e-88 DNA repair protein recA homolog 2 mitochondrial
blastp_kegg lcl|gmx:100777423 32 280 + 249 none 60.62 386 69.23 2e-87 DNA repair protein recA homolog 2 mitochondrial-like
blastp_kegg lcl|mtr:MTR_7g090880 32 278 + 247 none 58.88 394 69.83 3e-87 RecA
blastp_kegg lcl|tcc:TCM_028130 32 283 + 252 Gaps:45 80.60 397 61.88 2e-86 DNA repair protein recA
blastp_kegg lcl|cam:101491427 36 278 + 243 none 58.02 393 69.30 7e-86 DNA repair protein recA homolog 2 mitochondrial-like
blastp_kegg lcl|cmo:103502456 32 280 + 249 Gaps:5 63.00 400 67.86 4e-85 DNA repair protein recA homolog 2 mitochondrial
blastp_pdb 3hr8_A 54 222 + 169 Gaps:5 48.88 356 48.28 2e-47 mol:protein length:356 Protein recA
blastp_pdb 2zrb_A 51 222 + 172 Gaps:10 50.43 349 44.89 7e-47 mol:protein length:349 Protein recA
blastp_pdb 2zra_A 51 222 + 172 Gaps:10 50.43 349 44.89 7e-47 mol:protein length:349 Protein recA
blastp_pdb 2zr9_A 51 222 + 172 Gaps:10 50.43 349 44.89 7e-47 mol:protein length:349 Protein recA
blastp_pdb 2zr0_A 51 222 + 172 Gaps:10 50.43 349 44.89 7e-47 mol:protein length:349 Protein recA
blastp_pdb 2zrp_A 51 222 + 172 Gaps:10 50.43 349 44.89 7e-47 mol:protein length:349 Protein recA
blastp_pdb 2zro_A 51 222 + 172 Gaps:10 50.43 349 44.89 7e-47 mol:protein length:349 Protein recA
blastp_pdb 2zrn_A 51 222 + 172 Gaps:10 50.43 349 44.89 7e-47 mol:protein length:349 Protein recA
blastp_pdb 2zrm_A 51 222 + 172 Gaps:10 50.43 349 44.89 7e-47 mol:protein length:349 Protein recA
blastp_pdb 2zr7_A 51 222 + 172 Gaps:10 50.43 349 44.89 7e-47 mol:protein length:349 Protein recA
blastp_uniprot_sprot sp|Q8RY99|RECAM_ARATH 25 281 + 257 Gaps:37 76.86 389 57.53 4e-77 DNA repair protein recA homolog 2 mitochondrial OS Arabidopsis thaliana GN At3g10140 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZUP2|RECA3_ARATH 53 222 + 170 Gaps:5 40.70 430 58.29 3e-52 DNA repair protein recA homolog 3 mitochondrial OS Arabidopsis thaliana GN At2g19490 PE 2 SV 2
blastp_uniprot_sprot sp|Q3ST50|RECA_NITWN 55 222 + 168 Gaps:5 47.79 362 52.60 7e-52 Protein RecA OS Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|C1D4J2|RECA_LARHH 53 222 + 170 Gaps:5 49.44 354 50.29 2e-51 Protein RecA OS Laribacter hongkongensis (strain HLHK9) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|P62209|RECA_AZOL4 55 232 + 178 Gaps:5 50.97 359 51.37 2e-51 Protein RecA OS Azospirillum lipoferum (strain 4B) GN recA PE 1 SV 2
blastp_uniprot_sprot sp|Q89I84|RECA_BRADU 55 222 + 168 Gaps:5 47.79 362 52.02 4e-51 Protein RecA OS Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|Q9XBC1|RECA_RHOPA 55 222 + 168 Gaps:5 49.57 349 52.60 5e-51 Protein RecA OS Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN recA PE 3 SV 3
blastp_uniprot_sprot sp|Q21L79|RECA_SACD2 55 232 + 178 Gaps:6 52.30 348 48.90 6e-51 Protein RecA OS Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|C3MD93|RECA_RHISN 46 232 + 187 Gaps:6 52.91 361 48.69 9e-51 Protein RecA OS Rhizobium sp. (strain NGR234) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|P65976|RECA_BRUSU 46 222 + 177 Gaps:6 50.14 361 51.38 1e-50 Protein RecA OS Brucella suis biovar 1 (strain 1330) GN recA PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 86 206 121 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 86 293 208 PS50162 none RecA family profile 1. IPR020588
PRINTS 144 173 30 PR00142 none RecA protein signature IPR013765
PRINTS 178 207 30 PR00142 none RecA protein signature IPR013765
Gene3D 224 276 53 G3DSA:3.30.250.10 none none IPR023400
PANTHER 54 222 169 PTHR22942 none none none
PANTHER 54 222 169 PTHR22942:SF28 none none none
SUPERFAMILY 225 276 52 SSF54752 none none IPR023400
SUPERFAMILY 56 211 156 SSF52540 none none IPR027417
Pfam 58 209 152 PF00154 none recA bacterial DNA recombination protein IPR013765

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting