Protein : Qrob_P0180500.2 Q. robur
Protein Identifier  ? Qrob_P0180500.2 Organism . Name  Quercus robur
Score  93.3 Score Type  egn
Protein Description  (M=5) K03553 - recombination protein RecA Code Enzyme  EC:3.6.1.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 308  
Kegg Orthology  K03553
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0008094 DNA-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
GO:0003697 single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.
GO:0009432 SOS response An error-prone process for repairing damaged microbial DNA.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100248558 4 296 + 293 Gaps:18 66.08 398 76.81 6e-88 DNA repair protein recA homolog 2 mitochondrial-like
blastp_kegg lcl|pper:PRUPE_ppa016295mg 18 194 + 177 Gaps:18 61.39 259 84.91 2e-85 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10005129mg 2 296 + 295 Gaps:19 65.48 394 72.48 9e-85 hypothetical protein
blastp_kegg lcl|pmum:103342440 18 296 + 279 Gaps:18 63.75 389 77.82 5e-84 DNA repair protein recA homolog 2 mitochondrial
blastp_kegg lcl|cit:102612122 1 296 + 296 Gaps:19 64.43 402 71.43 7e-84 DNA repair protein recA homolog 2 mitochondrial-like
blastp_kegg lcl|cmo:103502456 4 294 + 291 Gaps:18 67.25 400 72.86 4e-82 DNA repair protein recA homolog 2 mitochondrial
blastp_kegg lcl|tcc:TCM_028130 2 297 + 296 Gaps:18 67.25 397 78.28 4e-82 DNA repair protein recA
blastp_kegg lcl|gmx:100777423 2 294 + 293 Gaps:19 67.62 386 69.73 5e-82 DNA repair protein recA homolog 2 mitochondrial-like
blastp_kegg lcl|mtr:MTR_7g090880 3 292 + 290 Gaps:19 65.48 394 71.71 8e-81 RecA
blastp_kegg lcl|cam:101491427 1 292 + 292 Gaps:19 66.16 393 70.38 3e-80 DNA repair protein recA homolog 2 mitochondrial-like
blastp_pdb 3hr8_A 21 202 + 182 Gaps:18 46.07 356 50.61 5e-44 mol:protein length:356 Protein recA
blastp_pdb 2zrb_A 18 285 + 268 Gaps:24 69.34 349 44.63 5e-43 mol:protein length:349 Protein recA
blastp_pdb 2zra_A 18 285 + 268 Gaps:24 69.34 349 44.63 5e-43 mol:protein length:349 Protein recA
blastp_pdb 2zr9_A 18 285 + 268 Gaps:24 69.34 349 44.63 5e-43 mol:protein length:349 Protein recA
blastp_pdb 2zr0_A 18 285 + 268 Gaps:24 69.34 349 44.63 5e-43 mol:protein length:349 Protein recA
blastp_pdb 2zrl_A 18 285 + 268 Gaps:24 69.34 349 44.63 5e-43 mol:protein length:349 Protein recA
blastp_pdb 2zrk_A 18 285 + 268 Gaps:24 69.34 349 44.63 5e-43 mol:protein length:349 Protein recA
blastp_pdb 2zrj_A 18 285 + 268 Gaps:24 69.34 349 44.63 5e-43 mol:protein length:349 Protein recA
blastp_pdb 2zri_A 18 285 + 268 Gaps:24 69.34 349 44.63 5e-43 mol:protein length:349 Protein recA
blastp_pdb 2zrh_A 18 285 + 268 Gaps:24 69.34 349 44.63 5e-43 mol:protein length:349 Protein recA
blastp_uniprot_sprot sp|Q8RY99|RECAM_ARATH 4 295 + 292 Gaps:18 67.10 389 70.50 5e-72 DNA repair protein recA homolog 2 mitochondrial OS Arabidopsis thaliana GN At3g10140 PE 2 SV 1
blastp_uniprot_sprot sp|Q3ST50|RECA_NITWN 22 291 + 270 Gaps:30 70.72 362 47.66 4e-48 Protein RecA OS Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|P62209|RECA_AZOL4 22 201 + 180 Gaps:18 45.13 359 56.79 1e-47 Protein RecA OS Azospirillum lipoferum (strain 4B) GN recA PE 1 SV 2
blastp_uniprot_sprot sp|Q89I84|RECA_BRADU 22 291 + 270 Gaps:30 70.72 362 47.66 4e-47 Protein RecA OS Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZUP2|RECA3_ARATH 20 279 + 260 Gaps:18 54.88 430 52.97 4e-47 DNA repair protein recA homolog 3 mitochondrial OS Arabidopsis thaliana GN At2g19490 PE 2 SV 2
blastp_uniprot_sprot sp|Q9XBC1|RECA_RHOPA 22 291 + 270 Gaps:30 73.35 349 48.05 4e-47 Protein RecA OS Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN recA PE 3 SV 3
blastp_uniprot_sprot sp|Q1QMW2|RECA_NITHX 22 291 + 270 Gaps:30 70.72 362 47.66 5e-47 Protein RecA OS Nitrobacter hamburgensis (strain X14 / DSM 10229) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|A5FXB8|RECA_ACICJ 21 278 + 258 Gaps:19 67.64 343 47.84 7e-47 Protein RecA OS Acidiphilium cryptum (strain JF-5) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|Q2W9P9|RECA_MAGSA 14 201 + 188 Gaps:18 47.35 359 52.35 9e-47 Protein RecA OS Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|P65976|RECA_BRUSU 22 291 + 270 Gaps:30 70.91 361 47.66 1e-46 Protein RecA OS Brucella suis biovar 1 (strain 1330) GN recA PE 3 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 239 290 52 SSF54752 none none IPR023400
PANTHER 21 75 55 PTHR22942 none none none
Gene3D 238 290 53 G3DSA:3.30.250.10 none none IPR023400
PANTHER 94 256 163 PTHR22942 none none none
ProSiteProfiles 53 307 255 PS50162 none RecA family profile 1. IPR020588
Pfam 209 287 79 PF00154 none recA bacterial DNA recombination protein IPR013765
Pfam 25 201 177 PF00154 none recA bacterial DNA recombination protein IPR013765
SUPERFAMILY 23 204 182 SSF52540 none none IPR027417
Gene3D 93 194 102 G3DSA:3.40.50.300 none none IPR027417
PRINTS 163 192 30 PR00142 none RecA protein signature IPR013765
PRINTS 129 158 30 PR00142 none RecA protein signature IPR013765
PANTHER 94 256 163 PTHR22942:SF28 none none none
PANTHER 21 75 55 PTHR22942:SF28 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting