Protein : Qrob_P0180370.2 Q. robur
Protein Identifier  ? Qrob_P0180370.2 Organism . Name  Quercus robur
Score  93.2 Score Type  egn
Protein Description  (M=5) K03553 - recombination protein RecA Code Enzyme  EC:3.6.1.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 365  
Kegg Orthology  K03553
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0008094 DNA-dependent ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
GO:0006259 DNA metabolic process Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO:0003697 single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.
GO:0009432 SOS response An error-prone process for repairing damaged microbial DNA.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0006s04660g 67 347 + 281 Gaps:66 87.40 381 60.66 1e-118 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10005129mg 59 353 + 295 Gaps:71 88.83 394 55.71 2e-116 hypothetical protein
blastp_kegg lcl|pop:POPTR_0016s05810g 67 356 + 290 Gaps:66 75.83 451 59.65 7e-115 POPTRDRAFT_255915 hypothetical protein
blastp_kegg lcl|cit:102612122 47 353 + 307 Gaps:76 88.81 402 55.18 1e-114 DNA repair protein recA homolog 2 mitochondrial-like
blastp_kegg lcl|rcu:RCOM_1277280 67 347 + 281 Gaps:69 86.60 388 58.33 2e-106 DNA repair protein reca putative (EC:3.6.3.8)
blastp_kegg lcl|csv:101206290 59 351 + 293 Gaps:69 86.78 401 55.46 1e-105 DNA repair protein recA homolog 2 mitochondrial-like
blastp_kegg lcl|vvi:100248558 55 353 + 299 Gaps:7 73.62 398 74.06 2e-90 DNA repair protein recA homolog 2 mitochondrial-like
blastp_kegg lcl|pper:PRUPE_ppa016295mg 78 243 + 166 Gaps:7 61.39 259 84.91 2e-86 hypothetical protein
blastp_kegg lcl|pmum:103342440 36 353 + 318 Gaps:13 79.95 389 69.77 2e-85 DNA repair protein recA homolog 2 mitochondrial
blastp_kegg lcl|gmx:100777423 59 242 + 184 Gaps:7 45.85 386 76.84 3e-84 DNA repair protein recA homolog 2 mitochondrial-like
blastp_pdb 3hr8_A 81 335 + 255 Gaps:73 88.20 356 36.62 3e-50 mol:protein length:356 Protein recA
blastp_pdb 1xmv_A 82 335 + 254 Gaps:69 86.24 356 38.11 8e-49 mol:protein length:356 RecA protein
blastp_pdb 1xms_A 82 335 + 254 Gaps:69 86.24 356 38.11 8e-49 mol:protein length:356 RecA protein
blastp_pdb 1u99_A 82 335 + 254 Gaps:69 86.24 356 38.11 8e-49 mol:protein length:356 RecA protein
blastp_pdb 1u98_A 82 335 + 254 Gaps:69 86.24 356 38.11 8e-49 mol:protein length:356 RecA protein
blastp_pdb 1u94_A 82 335 + 254 Gaps:69 86.24 356 38.11 8e-49 mol:protein length:356 RecA protein
blastp_pdb 2reb_A 82 335 + 254 Gaps:69 87.22 352 38.11 9e-49 mol:protein length:352 REC A
blastp_pdb 1rea_A 82 335 + 254 Gaps:69 87.22 352 38.11 9e-49 mol:protein length:352 REC A
blastp_pdb 1n03_G 82 335 + 254 Gaps:69 87.22 352 38.11 9e-49 mol:protein length:352 RecA protein
blastp_pdb 1n03_F 82 335 + 254 Gaps:69 87.22 352 38.11 9e-49 mol:protein length:352 RecA protein
blastp_uniprot_sprot sp|Q8RY99|RECAM_ARATH 33 352 + 320 Gaps:12 80.46 389 64.22 2e-74 DNA repair protein recA homolog 2 mitochondrial OS Arabidopsis thaliana GN At3g10140 PE 2 SV 1
blastp_uniprot_sprot sp|Q89I84|RECA_BRADU 82 350 + 269 Gaps:68 89.23 362 38.39 2e-58 Protein RecA OS Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|C1D4J2|RECA_LARHH 80 342 + 263 Gaps:68 89.55 354 37.85 1e-57 Protein RecA OS Laribacter hongkongensis (strain HLHK9) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|C3MD93|RECA_RHISN 73 348 + 276 Gaps:69 91.14 361 38.30 3e-57 Protein RecA OS Rhizobium sp. (strain NGR234) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|A6U9N5|RECA_SINMW 73 348 + 276 Gaps:69 91.14 361 38.60 2e-56 Protein RecA OS Sinorhizobium medicae (strain WSM419) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|B5ZRG2|RECA_RHILW 73 348 + 276 Gaps:69 90.88 362 38.30 2e-56 Protein RecA OS Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|A6X0E8|RECA_OCHA4 79 348 + 270 Gaps:78 89.75 361 38.89 3e-56 Protein RecA OS Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|B9JFS7|RECA_AGRRK 73 348 + 276 Gaps:69 91.14 361 37.99 3e-56 Protein RecA OS Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|P65976|RECA_BRUSU 73 348 + 276 Gaps:69 91.14 361 37.99 3e-56 Protein RecA OS Brucella suis biovar 1 (strain 1330) GN recA PE 3 SV 1
blastp_uniprot_sprot sp|P65975|RECA_BRUME 73 348 + 276 Gaps:69 91.14 361 37.99 3e-56 Protein RecA OS Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN recA PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 81 313 233 PTHR22942:SF28 none none none
ProSiteProfiles 113 364 252 PS50162 none RecA family profile 1. IPR020588
SUPERFAMILY 83 277 195 SSF52540 none none IPR027417
Gene3D 113 236 124 G3DSA:3.40.50.300 none none IPR027417
PRINTS 178 207 30 PR00142 none RecA protein signature IPR013765
PRINTS 212 241 30 PR00142 none RecA protein signature IPR013765
ProSiteProfiles 239 297 59 PS50163 none RecA family profile 2. IPR020587
Pfam 85 240 156 PF00154 none recA bacterial DNA recombination protein IPR013765
Pfam 243 343 101 PF00154 none recA bacterial DNA recombination protein IPR013765
PANTHER 81 313 233 PTHR22942 none none none
SUPERFAMILY 296 347 52 SSF54752 none none IPR023400
Gene3D 295 343 49 G3DSA:3.30.250.10 none none IPR023400

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting