Protein : Qrob_P0175510.2 Q. robur
Protein Identifier  ? Qrob_P0175510.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 2.5.1.21 - Squalene synthase. Code Enzyme  EC:2.5.1.21
Gene Prediction Quality  validated Protein length 

Sequence

Length: 344  
Kegg Orthology  K00801
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).
GO:0016740 transferase activity Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
GO:0008610 lipid biosynthetic process The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
GO:0004310 farnesyl-diphosphate farnesyltransferase activity Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103335730 17 337 + 321 Gaps:1 77.67 412 84.38 0.0 squalene synthase-like
blastp_kegg lcl|rcu:RCOM_1450010 17 337 + 321 Gaps:2 77.43 412 83.70 0.0 farnesyl-diphosphate farnesyltransferase putative (EC:2.5.1.21)
blastp_kegg lcl|pxb:103965221 17 337 + 321 Gaps:1 77.67 412 82.81 0.0 squalene synthase-like
blastp_kegg lcl|pper:PRUPE_ppa006420mg 17 337 + 321 Gaps:1 77.67 412 82.81 0.0 hypothetical protein
blastp_kegg lcl|vvi:100265798 16 337 + 322 Gaps:2 77.48 413 83.44 0.0 squalene synthase-like
blastp_kegg lcl|gmx:100775983 17 331 + 315 none 76.27 413 83.49 0.0 squalene synthase-like
blastp_kegg lcl|tcc:TCM_006798 16 337 + 322 Gaps:1 77.72 413 82.55 0.0 Squalene synthase 1 isoform 1
blastp_kegg lcl|gmx:547940 17 331 + 315 none 76.27 413 83.49 0.0 squalene synthase (EC:2.5.1.21)
blastp_kegg lcl|pvu:PHAVU_011G040100g 17 326 + 310 none 75.06 413 84.19 0.0 hypothetical protein
blastp_kegg lcl|sot:102581159 17 328 + 312 none 75.91 411 83.65 0.0 PSS1 sqs1-1 sqs1-2 sqs1-3 squalene synthase-like
blastp_pdb 1ezf_C 17 301 + 285 Gaps:8 83.82 340 48.07 4e-87 mol:protein length:340 FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE
blastp_pdb 1ezf_B 17 301 + 285 Gaps:8 83.82 340 48.07 4e-87 mol:protein length:340 FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE
blastp_pdb 1ezf_A 17 301 + 285 Gaps:8 83.82 340 48.07 4e-87 mol:protein length:340 FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE
blastp_pdb 3q30_A 17 301 + 285 Gaps:8 83.82 340 48.07 4e-87 mol:protein length:340 Squalene synthase
blastp_pdb 3q2z_A 17 301 + 285 Gaps:8 83.82 340 48.07 4e-87 mol:protein length:340 Squalene synthase
blastp_pdb 3lee_F 17 301 + 285 Gaps:8 83.82 340 48.07 4e-87 mol:protein length:340 Squalene synthetase
blastp_pdb 3lee_E 17 301 + 285 Gaps:8 83.82 340 48.07 4e-87 mol:protein length:340 Squalene synthetase
blastp_pdb 3lee_D 17 301 + 285 Gaps:8 83.82 340 48.07 4e-87 mol:protein length:340 Squalene synthetase
blastp_pdb 3lee_C 17 301 + 285 Gaps:8 83.82 340 48.07 4e-87 mol:protein length:340 Squalene synthetase
blastp_pdb 3lee_B 17 301 + 285 Gaps:8 83.82 340 48.07 4e-87 mol:protein length:340 Squalene synthetase
blastp_uniprot_sprot sp|P53800|FDFT_NICBE 17 328 + 312 none 75.91 411 82.05 0.0 Squalene synthase OS Nicotiana benthamiana PE 2 SV 1
blastp_uniprot_sprot sp|P53799|FDFT_ARATH 17 329 + 313 Gaps:5 76.59 410 76.75 1e-180 Squalene synthase OS Arabidopsis thaliana GN SQS1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SDW9|BSS_BOTBR 17 309 + 293 Gaps:12 65.73 461 50.83 9e-93 Squalene synthase OS Botryococcus braunii GN BSS PE 1 SV 1
blastp_uniprot_sprot sp|Q54DR1|FDFT_DICDI 17 304 + 288 Gaps:10 70.19 416 50.00 2e-91 Squalene synthase OS Dictyostelium discoideum GN fdfT PE 3 SV 1
blastp_uniprot_sprot sp|P53798|FDFT_MOUSE 17 316 + 300 Gaps:8 72.12 416 47.33 1e-89 Squalene synthase OS Mus musculus GN Fdft1 PE 2 SV 2
blastp_uniprot_sprot sp|Q02769|FDFT_RAT 17 316 + 300 Gaps:6 72.12 416 45.67 5e-89 Squalene synthase OS Rattus norvegicus GN Fdft1 PE 2 SV 1
blastp_uniprot_sprot sp|G0Y287|BOSS_BOTBR 16 305 + 290 Gaps:7 63.87 465 48.15 3e-87 Botryococcus squalene synthase OS Botryococcus braunii GN SSL-2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5R6U3|FDFT_PONAB 17 316 + 300 Gaps:8 71.94 417 46.67 1e-85 Squalene synthase OS Pongo abelii GN FDFT1 PE 2 SV 1
blastp_uniprot_sprot sp|P37268|FDFT_HUMAN 17 316 + 300 Gaps:8 71.94 417 46.67 1e-85 Squalene synthase OS Homo sapiens GN FDFT1 PE 1 SV 1
blastp_uniprot_sprot sp|Q32KR6|FDFT_BOVIN 17 316 + 300 Gaps:8 71.94 417 46.67 4e-84 Squalene synthase OS Bos taurus GN FDFT1 PE 2 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 138 166 29 PS01045 none Squalene and phytoene synthases signature 2. IPR019845
SUPERFAMILY 17 304 288 SSF48576 none none IPR008949
PANTHER 17 316 300 PTHR11626:SF0 none none none
Pfam 53 251 199 PF00494 none Squalene/phytoene synthase IPR002060
PANTHER 17 316 300 PTHR11626 none none none
ProSitePatterns 105 120 16 PS01044 none Squalene and phytoene synthases signature 1. IPR019845
Gene3D 17 304 288 G3DSA:1.10.600.10 none none IPR008949
TIGRFAM 17 304 288 TIGR01559 "KEGG:00100+2.5.1.21","KEGG:00909+2.5.1.21","MetaCyc:PWY-5670","UniPathway:UPA00767" squal_synth: farnesyl-diphosphate farnesyltransferase IPR006449

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5

0 Targeting