Protein : Qrob_P0173990.2 Q. robur
Protein Identifier  ? Qrob_P0173990.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0483//KOG0493//KOG0842//KOG0843//KOG4577 - Transcription factor HEX contains HOX and HALZ domains [Transcription]. // Transcription factor Engrailed contains HOX domain [General function prediction only]. // Transcription factor tinman/NKX2-3 contains HOX domain [Transcription]. // Transcription factor EMX1 and related HOX domain proteins [Transcription]. // Transcription factor LIM3 contains LIM and HOX domains [Transcription]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 810  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0008289 lipid binding Interacting selectively and non-covalently with a lipid.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100253940 1 805 + 805 Gaps:15 99.75 798 79.65 0.0 homeobox-leucine zipper protein ROC3-like
blastp_kegg lcl|tcc:TCM_016582 1 805 + 805 Gaps:25 99.75 798 79.90 0.0 Homeobox-leucine zipper protein HDG5 isoform 1
blastp_kegg lcl|pper:PRUPE_ppa014792mg 1 809 + 809 Gaps:28 100.00 831 75.69 0.0 hypothetical protein
blastp_kegg lcl|gmx:100812829 1 785 + 785 Gaps:7 98.00 800 76.79 0.0 homeobox-leucine zipper protein ROC3-like
blastp_kegg lcl|pvu:PHAVU_002G137000g 1 782 + 782 Gaps:16 97.35 791 77.92 0.0 hypothetical protein
blastp_kegg lcl|gmx:100793658 1 785 + 785 Gaps:20 98.23 789 77.94 0.0 homeobox-leucine zipper protein ROC3-like
blastp_kegg lcl|pop:POPTR_0003s09470g 1 808 + 808 Gaps:25 99.88 808 76.58 0.0 POPTRDRAFT_415411 homeobox-leucine zipper family protein
blastp_kegg lcl|pmum:103336844 1 809 + 809 Gaps:29 99.40 837 75.48 0.0 homeobox-leucine zipper protein HDG5
blastp_kegg lcl|cit:102612036 1 809 + 809 Gaps:30 100.00 823 75.94 0.0 homeobox-leucine zipper protein HDG5-like
blastp_kegg lcl|cmo:103503569 1 792 + 792 Gaps:30 97.66 813 75.69 0.0 homeobox-leucine zipper protein HDG5
blastp_pdb 3a01_F 83 144 + 62 Gaps:2 95.52 67 34.38 3e-07 mol:protein length:67 Homeobox protein aristaless
blastp_pdb 3a01_B 83 144 + 62 Gaps:2 95.52 67 34.38 3e-07 mol:protein length:67 Homeobox protein aristaless
blastp_pdb 3lnq_A 93 144 + 52 none 89.66 58 34.62 7e-06 mol:protein length:58 Homeobox protein aristaless
blastp_pdb 3a02_A 93 144 + 52 none 86.67 60 34.62 7e-06 mol:protein length:60 Homeobox protein aristaless
blastp_uniprot_sprot sp|Q9FJS2|HDG5_ARATH 8 785 + 778 Gaps:93 98.18 826 60.67 0.0 Homeobox-leucine zipper protein HDG5 OS Arabidopsis thaliana GN HDG5 PE 2 SV 3
blastp_uniprot_sprot sp|Q336P2|ROC3_ORYSJ 1 784 + 784 Gaps:92 98.41 882 55.99 0.0 Homeobox-leucine zipper protein ROC3 OS Oryza sativa subsp. japonica GN ROC3 PE 2 SV 1
blastp_uniprot_sprot sp|A2ZAI7|ROC3_ORYSI 1 784 + 784 Gaps:92 98.41 882 55.99 0.0 Homeobox-leucine zipper protein ROC3 OS Oryza sativa subsp. indica GN ROC3 PE 3 SV 2
blastp_uniprot_sprot sp|Q8L7H4|HDG4_ARATH 12 780 + 769 Gaps:97 97.88 709 55.91 0.0 Homeobox-leucine zipper protein HDG4 OS Arabidopsis thaliana GN HDG4 PE 1 SV 1
blastp_uniprot_sprot sp|Q93V99|PDF2_ARATH 58 781 + 724 Gaps:41 94.89 743 49.65 0.0 Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS Arabidopsis thaliana GN PDF2 PE 2 SV 1
blastp_uniprot_sprot sp|Q0J9X2|ROC2_ORYSJ 43 784 + 742 Gaps:47 92.73 784 48.28 0.0 Homeobox-leucine zipper protein ROC2 OS Oryza sativa subsp. japonica GN ROC2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RWU4|ATML1_ARATH 58 781 + 724 Gaps:47 95.41 762 47.59 0.0 Homeobox-leucine zipper protein MERISTEM L1 OS Arabidopsis thaliana GN ATML1 PE 2 SV 1
blastp_uniprot_sprot sp|Q94C37|HDG2_ARATH 53 785 + 733 Gaps:61 95.98 721 49.13 0.0 Homeobox-leucine zipper protein HDG2 OS Arabidopsis thaliana GN HDG2 PE 2 SV 1
blastp_uniprot_sprot sp|Q6ZAR0|ROC1_ORYSJ 59 780 + 722 Gaps:48 89.54 784 49.15 0.0 Homeobox-leucine zipper protein ROC1 OS Oryza sativa subsp. japonica GN ROC1 PE 2 SV 1
blastp_uniprot_sprot sp|A3BPF2|ROC7_ORYSJ 56 789 + 734 Gaps:71 92.79 749 49.21 0.0 Homeobox-leucine zipper protein ROC7 OS Oryza sativa subsp. japonica GN ROC7 PE 2 SV 1
rpsblast_cdd gnl|CDD|176884 280 510 + 231 Gaps:4 100.00 229 59.39 1e-101 cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
rpsblast_cdd gnl|CDD|202011 285 511 + 227 Gaps:26 100.00 205 44.39 3e-38 pfam01852 START START domain.
rpsblast_cdd gnl|CDD|197591 286 511 + 226 Gaps:25 100.00 205 30.73 5e-26 smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein.
rpsblast_cdd gnl|CDD|200956 86 141 + 56 none 98.25 57 39.29 3e-18 pfam00046 Homeobox Homeobox domain.
rpsblast_cdd gnl|CDD|197696 84 141 + 58 Gaps:1 100.00 57 43.86 3e-15 smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes.
rpsblast_cdd gnl|CDD|28970 86 144 + 59 none 100.00 59 42.37 7e-14 cd00086 homeodomain Homeodomain DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes may bind to DNA as monomers or as homo- and/or heterodimers in a sequence-specific manner..

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 118 141 24 PS00027 none 'Homeobox' domain signature. IPR017970
SUPERFAMILY 277 513 237 SSF55961 none none none
ProSiteProfiles 83 143 61 PS50071 none 'Homeobox' domain profile. IPR001356
SUPERFAMILY 78 144 67 SSF46689 none none IPR009057
Gene3D 79 149 71 G3DSA:1.10.10.60 none none IPR009057
PANTHER 280 792 513 PTHR24325 none none none
PANTHER 59 245 187 PTHR24325 none none none
SMART 84 147 64 SM00389 none Homeodomain IPR001356
Pfam 86 141 56 PF00046 none Homeobox domain IPR001356
SMART 285 511 227 SM00234 none in StAR and phosphatidylcholine transfer protein IPR002913
Pfam 286 511 226 PF01852 none START domain IPR002913
SUPERFAMILY 529 708 180 SSF55961 none none none
SUPERFAMILY 738 776 39 SSF55961 none none none
Coils 142 170 29 Coil none none none
PANTHER 280 792 513 PTHR24325:SF10 none none none
PANTHER 59 245 187 PTHR24325:SF10 none none none
ProSiteProfiles 276 514 239 PS50848 none START domain profile. IPR002913

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting