Protein : Qrob_P0160270.2 Q. robur
Protein Identifier  ? Qrob_P0160270.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=7) PTHR12565:SF77 - TRANSCRIPTION FACTOR AIG1-RELATED (PTHR12565:SF77) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 256  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0019s11870g 1 255 + 255 Gaps:12 100.00 267 59.55 1e-99 POPTRDRAFT_574335 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0553450 1 255 + 255 Gaps:14 100.00 265 57.36 5e-92 hypothetical protein
blastp_kegg lcl|pop:POPTR_0013s12190g 1 254 + 254 Gaps:14 99.25 268 59.02 4e-91 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10016261mg 1 240 + 240 Gaps:13 93.31 269 58.57 3e-89 hypothetical protein
blastp_kegg lcl|cit:102610740 1 240 + 240 Gaps:13 93.31 269 58.57 7e-89 transcription factor bHLH30-like
blastp_kegg lcl|csv:101205926 21 255 + 235 Gaps:9 96.03 252 63.64 3e-86 transcription factor bHLH30-like
blastp_kegg lcl|cmo:103496369 21 255 + 235 Gaps:9 94.53 256 63.22 1e-85 transcription factor bHLH30-like
blastp_kegg lcl|vvi:100267703 28 255 + 228 Gaps:9 91.51 259 62.45 3e-85 transcription factor bHLH30-like
blastp_kegg lcl|gmx:100788819 1 253 + 253 Gaps:17 98.45 258 57.09 1e-80 transcription factor bHLH30-like
blastp_kegg lcl|tcc:TCM_001690 1 255 + 255 Gaps:23 90.34 290 61.45 2e-77 Basic helix-loop-helix DNA-binding superfamily protein putative
blastp_uniprot_sprot sp|Q9LS08|BH032_ARATH 65 212 + 148 none 43.02 344 45.95 8e-31 Transcription factor AIG1 OS Arabidopsis thaliana GN BHLH32 PE 1 SV 1
blastp_uniprot_sprot sp|Q9S7Y1|BH030_ARATH 65 244 + 180 Gaps:13 50.27 368 43.24 4e-28 Transcription factor bHLH30 OS Arabidopsis thaliana GN BHLH30 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LET0|BH107_ARATH 64 220 + 157 Gaps:6 70.00 230 40.99 5e-27 Putative transcription factor bHLH107 OS Arabidopsis thaliana GN BHLH107 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XEF0|BH051_ARATH 61 221 + 161 Gaps:9 66.93 254 38.24 4e-26 Transcription factor bHLH51 OS Arabidopsis thaliana GN BHLH51 PE 2 SV 1
blastp_uniprot_sprot sp|O80674|BH106_ARATH 64 220 + 157 Gaps:5 64.03 253 41.98 1e-23 Transcription factor bHLH106 OS Arabidopsis thaliana GN BHLH106 PE 2 SV 1
blastp_uniprot_sprot sp|P0CB25|BH131_ARATH 59 203 + 145 Gaps:19 54.69 256 37.86 1e-15 Transcription factor bHLH131 OS Arabidopsis thaliana GN BHLH131 PE 2 SV 1
blastp_uniprot_sprot sp|Q9T072|BH025_ARATH 58 221 + 164 Gaps:26 57.93 328 24.21 3e-09 Transcription factor bHLH25 OS Arabidopsis thaliana GN BHLH25 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FIP9|MYC3_ARATH 15 144 + 130 Gaps:12 22.97 592 37.50 4e-09 Transcription factor MYC3 OS Arabidopsis thaliana GN MYC3 PE 1 SV 1
blastp_uniprot_sprot sp|O49687|MYC4_ARATH 32 124 + 93 Gaps:1 15.96 589 37.23 5e-09 Transcription factor MYC4 OS Arabidopsis thaliana GN MYC4 PE 1 SV 1
blastp_uniprot_sprot sp|Q8S3F1|BH020_ARATH 70 139 + 70 none 21.88 320 38.57 2e-08 Transcription factor NAI1 OS Arabidopsis thaliana GN NAI1 PE 2 SV 1
rpsblast_cdd gnl|CDD|200925 71 118 + 48 Gaps:2 96.15 52 46.00 1e-08 pfam00010 HLH Helix-loop-helix DNA-binding domain.
rpsblast_cdd gnl|CDD|197674 75 123 + 49 Gaps:3 98.11 53 38.46 3e-08 smart00353 HLH helix loop helix domain.
rpsblast_cdd gnl|CDD|28964 71 122 + 52 Gaps:3 91.67 60 38.18 1e-07 cd00083 HLH Helix-loop-helix domain found in specific DNA- binding proteins that act as transcription factors 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region HLH forms homo- and heterodimers dimerization creates a parallel left-handed four helix bundle the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3) those lacking the basic domain (Emc Id) function as negative regulators since they fail to bind DNA those (hairy E(spl) deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3) those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins the binding of small molecules (e.g. dioxin) and interactions with non-PAS proteins..
rpsblast_kog gnl|CDD|38769 71 145 + 75 Gaps:11 10.71 803 26.74 2e-07 KOG3561 KOG3561 KOG3561 Aryl-hydrocarbon receptor nuclear translocator [Transcription].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 61 159 99 PTHR12565:SF77 none none none
SUPERFAMILY 72 125 54 SSF47459 none none IPR011598
ProSiteProfiles 68 117 50 PS50888 none Myc-type, basic helix-loop-helix (bHLH) domain profile. IPR011598
PANTHER 61 159 99 PTHR12565 none none none
Gene3D 155 220 66 G3DSA:3.30.70.260 none none none
Gene3D 72 126 55 G3DSA:4.10.280.10 none none IPR011598
SMART 74 123 50 SM00353 none helix loop helix domain IPR011598
Pfam 71 117 47 PF00010 none Helix-loop-helix DNA-binding domain IPR011598

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting