Protein : Qrob_P0159650.2 Q. robur
Protein Identifier  ? Qrob_P0159650.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=3) K03018 - DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 142  
Kegg Orthology  K03018
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103502942 1 141 + 141 none 10.07 1400 82.98 5e-72 DNA-directed RNA polymerase III subunit rpc1
blastp_kegg lcl|csv:101214828 1 141 + 141 none 10.07 1400 82.98 8e-72 DNA-directed RNA polymerase III subunit rpc1-like
blastp_kegg lcl|vvi:100267354 1 141 + 141 none 10.20 1383 82.98 2e-71 DNA-directed RNA polymerase III subunit rpc1-like
blastp_kegg lcl|tcc:TCM_012066 1 141 + 141 none 10.11 1395 79.43 1e-67 DNA-directed RNA polymerase
blastp_kegg lcl|cit:102611247 1 141 + 141 none 10.04 1404 78.72 1e-67 DNA-directed RNA polymerase III subunit rpc1-like
blastp_kegg lcl|cic:CICLE_v10027681mg 1 141 + 141 none 10.09 1397 78.72 2e-67 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s35710g 7 141 + 135 none 9.68 1394 82.96 9e-67 POPTRDRAFT_1068975 DNA-directed RNA polymerase family protein
blastp_kegg lcl|fve:101314163 7 141 + 135 none 9.71 1390 82.22 2e-65 DNA-directed RNA polymerase III subunit rpc1-like
blastp_kegg lcl|rcu:RCOM_1440440 1 141 + 141 none 10.20 1383 78.72 1e-64 DNA-directed RNA polymerase III largest subunit putative
blastp_kegg lcl|sot:102603938 1 141 + 141 none 10.11 1394 75.89 2e-64 DNA-directed RNA polymerase III subunit rpc1-like
blastp_pdb 2pmz_G 6 141 + 136 none 34.69 392 43.38 4e-30 mol:protein length:392 DNA-directed RNA polymerase subunit A""
blastp_pdb 2pmz_C 6 141 + 136 none 34.69 392 43.38 4e-30 mol:protein length:392 DNA-directed RNA polymerase subunit A""
blastp_pdb 3hkz_M 6 141 + 136 none 34.43 395 43.38 5e-30 mol:protein length:395 DNA-directed RNA polymerase subunit A''
blastp_pdb 3hkz_C 6 141 + 136 none 34.43 395 43.38 5e-30 mol:protein length:395 DNA-directed RNA polymerase subunit A''
blastp_pdb 2y0s_Y 6 141 + 136 none 34.43 395 42.65 2e-29 mol:protein length:395 DNA-DIRECTED RNA POLYMERASE SUBUNIT A''
blastp_pdb 2y0s_C 6 141 + 136 none 34.43 395 42.65 2e-29 mol:protein length:395 DNA-DIRECTED RNA POLYMERASE SUBUNIT A''
blastp_pdb 2wb1_Y 6 141 + 136 none 34.43 395 42.65 2e-29 mol:protein length:395 DNA-DIRECTED RNA POLYMERASE RPO1C SUBUNIT
blastp_pdb 2wb1_C 6 141 + 136 none 34.43 395 42.65 2e-29 mol:protein length:395 DNA-DIRECTED RNA POLYMERASE RPO1C SUBUNIT
blastp_pdb 2waq_C 6 141 + 136 none 34.43 395 42.65 2e-29 mol:protein length:395 DNA-DIRECTED RNA POLYMERASE RPO1C SUBUNIT
blastp_pdb 3h0g_M 8 138 + 131 none 7.48 1752 40.46 5e-26 mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1
blastp_uniprot_sprot sp|O14802|RPC1_HUMAN 1 141 + 141 none 10.14 1390 60.99 5e-51 DNA-directed RNA polymerase III subunit RPC1 OS Homo sapiens GN POLR3A PE 1 SV 2
blastp_uniprot_sprot sp|Q5ZL98|RPC1_CHICK 1 141 + 141 none 10.14 1390 60.99 8e-51 DNA-directed RNA polymerase III subunit RPC1 OS Gallus gallus GN POLR3A PE 2 SV 1
blastp_uniprot_sprot sp|A4IF62|RPC1_BOVIN 1 141 + 141 none 10.14 1390 60.99 8e-51 DNA-directed RNA polymerase III subunit RPC1 OS Bos taurus GN POLR3A PE 2 SV 1
blastp_uniprot_sprot sp|Q6BI69|RPC1_DEBHA 1 138 + 138 none 9.47 1457 61.59 2e-49 DNA-directed RNA polymerase III subunit RPC1 OS Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN RPC1 PE 3 SV 2
blastp_uniprot_sprot sp|P04051|RPC1_YEAST 1 138 + 138 none 9.45 1460 61.59 7e-49 DNA-directed RNA polymerase III subunit RPC1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPO31 PE 1 SV 1
blastp_uniprot_sprot sp|Q86AQ5|RPC1_DICDI 1 141 + 141 none 9.72 1450 58.87 7e-48 DNA-directed RNA polymerase III subunit rpc1 OS Dictyostelium discoideum GN polr3a PE 3 SV 1
blastp_uniprot_sprot sp|O94666|RPC1_SCHPO 6 141 + 136 none 9.68 1405 58.82 2e-45 DNA-directed RNA polymerase III subunit rpc1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpc1 PE 2 SV 1
blastp_uniprot_sprot sp|P25202|RPC1_GIAIN 1 140 + 140 Gaps:1 8.10 1741 52.48 7e-42 DNA-directed RNA polymerase III subunit RPC1 OS Giardia intestinalis GN RPOA3 PE 3 SV 1
blastp_uniprot_sprot sp|P27625|RPC1_PLAFA 1 138 + 138 none 5.90 2339 53.62 3e-39 DNA-directed RNA polymerase III subunit RPC1 OS Plasmodium falciparum PE 3 SV 1
blastp_uniprot_sprot sp|P08968|RPC1_TRYBB 8 133 + 126 none 8.24 1530 54.76 2e-37 DNA-directed RNA polymerase III subunit RPC1 OS Trypanosoma brucei brucei PE 3 SV 1

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 6 141 136 PTHR19376 none none none
Pfam 7 92 86 PF04998 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 5 IPR007081
PANTHER 6 141 136 PTHR19376:SF31 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6";signature_desc=OS04G0572600 PROTEIN none IPR015700
SUPERFAMILY 5 138 134 SSF64484 none none none

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting