Protein : Qrob_P0159640.2 Q. robur
Protein Identifier  ? Qrob_P0159640.2 Organism . Name  Quercus robur
Score  56.1 Score Type  egn
Protein Description  (M=3) K03018 - DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 420  
Kegg Orthology  K03018
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|obr:102718648 8 417 + 410 Gaps:49 25.99 1389 58.17 9e-125 DNA-directed RNA polymerase III subunit rpc1-like
blastp_kegg lcl|cmo:103502942 8 417 + 410 Gaps:74 25.29 1400 57.34 5e-112 DNA-directed RNA polymerase III subunit rpc1
blastp_kegg lcl|csv:101214828 8 417 + 410 Gaps:74 25.29 1400 57.34 9e-112 DNA-directed RNA polymerase III subunit rpc1-like
blastp_kegg lcl|pda:103716702 8 405 + 398 Gaps:61 33.10 1018 56.08 2e-110 DNA-directed RNA polymerase III subunit rpc1
blastp_kegg lcl|mus:103986088 8 405 + 398 Gaps:61 24.56 1372 56.38 6e-108 DNA-directed RNA polymerase III subunit rpc1
blastp_kegg lcl|rcu:RCOM_1440440 6 419 + 414 Gaps:73 25.81 1383 56.58 2e-106 DNA-directed RNA polymerase III largest subunit putative
blastp_kegg lcl|dosa:Os04t0492300-01 8 419 + 412 Gaps:65 25.09 1383 54.76 5e-105 Os04g0492300 Similar to DNA-directed RNA polymerase II largest chain.
blastp_kegg lcl|osa:4336254 8 419 + 412 Gaps:65 25.09 1383 54.76 5e-105 Os04g0492300
blastp_kegg lcl|sita:101755203 8 410 + 403 Gaps:62 24.55 1397 53.94 4e-102 DNA-directed RNA polymerase III subunit rpc1-like
blastp_kegg lcl|mtr:MTR_4g061800 8 417 + 410 Gaps:72 35.71 1036 54.59 3e-101 DNA-directed RNA polymerase subunit beta
blastp_pdb 3j0k_A 10 415 + 406 Gaps:87 23.30 1455 35.40 6e-36 mol:protein length:1455 DNA-directed RNA polymerase II largest subuni
blastp_pdb 3s2h_A 10 415 + 406 Gaps:85 19.56 1733 34.51 9e-36 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s2d_A 10 415 + 406 Gaps:85 19.56 1733 34.51 9e-36 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s1r_A 10 415 + 406 Gaps:85 19.56 1733 34.51 9e-36 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s1q_A 10 415 + 406 Gaps:85 19.56 1733 34.51 9e-36 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s1n_A 10 415 + 406 Gaps:85 19.56 1733 34.51 9e-36 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s1m_A 10 415 + 406 Gaps:85 19.56 1733 34.51 9e-36 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s17_A 10 415 + 406 Gaps:85 19.56 1733 34.51 9e-36 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s16_A 10 415 + 406 Gaps:85 19.56 1733 34.51 9e-36 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_pdb 3s15_A 10 415 + 406 Gaps:85 19.56 1733 34.51 9e-36 mol:protein length:1733 DNA-directed RNA polymerase II subunit RPB1
blastp_uniprot_sprot sp|O94666|RPC1_SCHPO 8 402 + 395 Gaps:77 24.48 1405 39.83 3e-53 DNA-directed RNA polymerase III subunit rpc1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpc1 PE 2 SV 1
blastp_uniprot_sprot sp|Q86AQ5|RPC1_DICDI 8 359 + 352 Gaps:65 19.79 1450 42.86 2e-52 DNA-directed RNA polymerase III subunit rpc1 OS Dictyostelium discoideum GN polr3a PE 3 SV 1
blastp_uniprot_sprot sp|A4IF62|RPC1_BOVIN 10 403 + 394 Gaps:10 23.24 1390 52.01 2e-44 DNA-directed RNA polymerase III subunit RPC1 OS Bos taurus GN POLR3A PE 2 SV 1
blastp_uniprot_sprot sp|Q5ZL98|RPC1_CHICK 10 403 + 394 Gaps:10 23.24 1390 52.01 3e-43 DNA-directed RNA polymerase III subunit RPC1 OS Gallus gallus GN POLR3A PE 2 SV 1
blastp_uniprot_sprot sp|O14802|RPC1_HUMAN 10 403 + 394 Gaps:10 23.24 1390 51.70 4e-43 DNA-directed RNA polymerase III subunit RPC1 OS Homo sapiens GN POLR3A PE 1 SV 2
blastp_uniprot_sprot sp|P04051|RPC1_YEAST 8 361 + 354 Gaps:12 20.27 1460 51.01 1e-42 DNA-directed RNA polymerase III subunit RPC1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPO31 PE 1 SV 1
blastp_uniprot_sprot sp|Q6BI69|RPC1_DEBHA 8 389 + 382 Gaps:11 22.17 1457 48.30 4e-41 DNA-directed RNA polymerase III subunit RPC1 OS Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN RPC1 PE 3 SV 2
blastp_uniprot_sprot sp|P08968|RPC1_TRYBB 8 312 + 305 Gaps:1 16.01 1530 53.06 2e-37 DNA-directed RNA polymerase III subunit RPC1 OS Trypanosoma brucei brucei PE 3 SV 1
blastp_uniprot_sprot sp|P27625|RPC1_PLAFA 8 307 + 300 none 10.00 2339 55.56 2e-37 DNA-directed RNA polymerase III subunit RPC1 OS Plasmodium falciparum PE 3 SV 1
blastp_uniprot_sprot sp|P25202|RPC1_GIAIN 8 307 + 300 none 13.73 1741 51.46 3e-37 DNA-directed RNA polymerase III subunit RPC1 OS Giardia intestinalis GN RPOA3 PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 212 303 92 SSF64484 none none none
SUPERFAMILY 8 130 123 SSF64484 none none none
Pfam 52 148 97 PF05000 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 4 IPR007083
PANTHER 214 403 190 PTHR19376:SF31 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6";signature_desc=OS04G0572600 PROTEIN none IPR015700
PANTHER 8 154 147 PTHR19376:SF31 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6";signature_desc=OS04G0572600 PROTEIN none IPR015700
PANTHER 8 154 147 PTHR19376 none none none
Coils 65 86 22 Coil none none none
Pfam 222 313 92 PF04998 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 5 IPR007081
Phobius 153 174 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 175 419 245 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 152 152 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 214 403 190 PTHR19376 none none none

1 Localization

Analysis Start End Length
TMHMM 153 175 22

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting