Protein : Qrob_P0159630.2 Q. robur
Protein Identifier  ? Qrob_P0159630.2 Organism . Name  Quercus robur
Score  3.1 Score Type  egn
Protein Description  (M=3) K03018 - DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 592  
Kegg Orthology  K03018
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103949005 6 580 + 575 Gaps:33 67.82 864 70.99 0.0 DNA-directed RNA polymerase III subunit rpc1-like
blastp_kegg lcl|cit:102611247 1 580 + 580 Gaps:31 41.95 1404 71.99 0.0 DNA-directed RNA polymerase III subunit rpc1-like
blastp_kegg lcl|tcc:TCM_012066 14 580 + 567 Gaps:31 41.43 1395 72.84 0.0 DNA-directed RNA polymerase
blastp_kegg lcl|cic:CICLE_v10027681mg 1 580 + 580 Gaps:46 43.24 1397 70.20 0.0 hypothetical protein
blastp_kegg lcl|mdm:103421798 6 580 + 575 Gaps:33 41.30 1419 70.99 0.0 DNA-directed RNA polymerase III subunit rpc1
blastp_kegg lcl|vvi:100267354 14 580 + 567 Gaps:34 41.87 1383 72.37 0.0 DNA-directed RNA polymerase III subunit rpc1-like
blastp_kegg lcl|pper:PRUPE_ppa024521mg 1 580 + 580 Gaps:33 68.17 867 68.53 0.0 hypothetical protein
blastp_kegg lcl|pmum:103322422 1 580 + 580 Gaps:33 41.47 1425 69.20 0.0 DNA-directed RNA polymerase III subunit rpc1
blastp_kegg lcl|pop:POPTR_0001s35710g 6 580 + 575 Gaps:31 42.04 1394 69.11 0.0 POPTRDRAFT_1068975 DNA-directed RNA polymerase family protein
blastp_kegg lcl|csv:101214828 6 580 + 575 Gaps:44 41.36 1400 69.78 0.0 DNA-directed RNA polymerase III subunit rpc1-like
blastp_pdb 2y0s_W 26 543 + 518 Gaps:38 57.27 880 40.08 2e-112 mol:protein length:880 DNA-DIRECTED RNA POLYMERASE
blastp_pdb 2y0s_A 26 543 + 518 Gaps:38 57.27 880 40.08 2e-112 mol:protein length:880 DNA-DIRECTED RNA POLYMERASE
blastp_pdb 2wb1_W 26 543 + 518 Gaps:38 57.27 880 40.08 2e-112 mol:protein length:880 DNA-DIRECTED RNA POLYMERASE RPO1N SUBUNIT
blastp_pdb 2wb1_A 26 543 + 518 Gaps:38 57.27 880 40.08 2e-112 mol:protein length:880 DNA-DIRECTED RNA POLYMERASE RPO1N SUBUNIT
blastp_pdb 2waq_A 26 543 + 518 Gaps:38 57.27 880 40.08 2e-112 mol:protein length:880 DNA-DIRECTED RNA POLYMERASE RPO1N SUBUNIT
blastp_pdb 3hkz_I 26 543 + 518 Gaps:58 57.27 880 41.27 3e-111 mol:protein length:880 DNA-directed RNA polymerase subunit A'
blastp_pdb 3hkz_A 26 543 + 518 Gaps:58 57.27 880 41.27 3e-111 mol:protein length:880 DNA-directed RNA polymerase subunit A'
blastp_pdb 2pmz_Q 26 543 + 518 Gaps:58 57.27 880 41.27 3e-111 mol:protein length:880 DNA-directed RNA polymerase subunit A
blastp_pdb 2pmz_A 26 543 + 518 Gaps:58 57.27 880 41.27 3e-111 mol:protein length:880 DNA-directed RNA polymerase subunit A
blastp_pdb 3h0g_M 26 580 + 555 Gaps:43 31.96 1752 36.25 1e-91 mol:protein length:1752 DNA-directed RNA polymerase II subunit rpb1
blastp_uniprot_sprot sp|Q86AQ5|RPC1_DICDI 21 580 + 560 Gaps:37 39.52 1450 49.21 1e-176 DNA-directed RNA polymerase III subunit rpc1 OS Dictyostelium discoideum GN polr3a PE 3 SV 1
blastp_uniprot_sprot sp|P04051|RPC1_YEAST 25 586 + 562 Gaps:54 40.68 1460 45.45 5e-162 DNA-directed RNA polymerase III subunit RPC1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPO31 PE 1 SV 1
blastp_uniprot_sprot sp|O94666|RPC1_SCHPO 20 580 + 561 Gaps:40 41.07 1405 45.75 2e-161 DNA-directed RNA polymerase III subunit rpc1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpc1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6BI69|RPC1_DEBHA 20 580 + 561 Gaps:51 40.63 1457 45.27 8e-161 DNA-directed RNA polymerase III subunit RPC1 OS Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN RPC1 PE 3 SV 2
blastp_uniprot_sprot sp|Q5ZL98|RPC1_CHICK 16 591 + 576 Gaps:50 43.45 1390 44.04 2e-151 DNA-directed RNA polymerase III subunit RPC1 OS Gallus gallus GN POLR3A PE 2 SV 1
blastp_uniprot_sprot sp|O14802|RPC1_HUMAN 16 580 + 565 Gaps:45 42.30 1390 44.39 7e-150 DNA-directed RNA polymerase III subunit RPC1 OS Homo sapiens GN POLR3A PE 1 SV 2
blastp_uniprot_sprot sp|A4IF62|RPC1_BOVIN 16 580 + 565 Gaps:45 42.30 1390 44.22 3e-149 DNA-directed RNA polymerase III subunit RPC1 OS Bos taurus GN POLR3A PE 2 SV 1
blastp_uniprot_sprot sp|P31813|RPOA1_THECE 28 576 + 549 Gaps:49 59.23 905 41.98 3e-124 DNA-directed RNA polymerase subunit A' OS Thermococcus celer GN rpoA1 PE 3 SV 1
blastp_uniprot_sprot sp|P11512|RPOA1_SULAC 28 585 + 558 Gaps:45 61.48 880 39.74 2e-115 DNA-directed RNA polymerase subunit A' OS Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN rpoA1 PE 3 SV 2
blastp_uniprot_sprot sp|O27125|RPOA1_METTH 26 560 + 535 Gaps:44 59.20 870 40.58 1e-114 DNA-directed RNA polymerase subunit A' OS Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN rpoA1 PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 362 389 28 G3DSA:2.40.40.20 none none none
Gene3D 449 521 73 G3DSA:2.40.40.20 none none none
PANTHER 22 580 559 PTHR19376 none none none
Pfam 521 580 60 PF04983 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 3 IPR007066
PANTHER 22 580 559 PTHR19376:SF31 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6";signature_desc=OS04G0572600 PROTEIN none IPR015700
SMART 249 546 298 SM00663 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase I subunit A N-terminus IPR006592
Pfam 357 517 161 PF00623 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 2 IPR000722
Pfam 26 355 330 PF04997 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb1, domain 1 IPR007080
Gene3D 390 447 58 G3DSA:3.30.1490.180 none none none
SUPERFAMILY 27 584 558 SSF64484 none none none

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting