Protein : Qrob_P0156020.2 Q. robur
Protein Identifier  ? Qrob_P0156020.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K09060 - plant G-box-binding factor Gene Prediction Quality  validated
Protein length 

Sequence

Length: 381  
Kegg Orthology  K09060
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa006173mg 19 380 + 362 Gaps:29 90.80 424 67.27 2e-169 hypothetical protein
blastp_kegg lcl|pmum:103332281 19 380 + 362 Gaps:29 90.80 424 66.75 2e-167 common plant regulatory factor 1-like
blastp_kegg lcl|vvi:100248302 1 380 + 380 Gaps:50 100.00 430 62.56 6e-167 common plant regulatory factor 1-like
blastp_kegg lcl|pvu:PHAVU_010G108800g 1 380 + 380 Gaps:54 100.00 426 62.44 2e-160 hypothetical protein
blastp_kegg lcl|gmx:100781875 1 380 + 380 Gaps:59 100.00 425 62.59 5e-160 common plant regulatory factor 1-like
blastp_kegg lcl|cam:101498921 1 380 + 380 Gaps:52 100.00 424 61.79 8e-159 common plant regulatory factor 1-like
blastp_kegg lcl|mdm:103439291 19 380 + 362 Gaps:33 90.89 428 64.01 3e-157 common plant regulatory factor 1
blastp_kegg lcl|cic:CICLE_v10020314mg 1 380 + 380 Gaps:49 100.00 421 61.28 3e-156 hypothetical protein
blastp_kegg lcl|cit:102607505 1 380 + 380 Gaps:49 100.00 421 61.28 3e-156 common plant regulatory factor 1-like
blastp_kegg lcl|mtr:MTR_7g116890 1 380 + 380 Gaps:53 100.00 425 61.41 5e-155 G-box binding factor
blastp_uniprot_sprot sp|Q99089|CPRF1_PETCR 19 380 + 362 Gaps:21 91.24 411 53.33 5e-114 Common plant regulatory factor 1 OS Petroselinum crispum GN CPRF1 PE 2 SV 1
blastp_uniprot_sprot sp|P42776|GBF3_ARATH 1 380 + 380 Gaps:90 100.00 382 55.50 3e-97 G-box-binding factor 3 OS Arabidopsis thaliana GN GBF3 PE 1 SV 2
blastp_uniprot_sprot sp|Q99142|TAF1_TOBAC 45 305 + 261 Gaps:20 96.23 265 54.12 1e-70 Transcriptional activator TAF-1 (Fragment) OS Nicotiana tabacum GN TAF1 PE 2 SV 1
blastp_uniprot_sprot sp|P42775|GBF2_ARATH 1 379 + 379 Gaps:118 99.72 360 48.19 1e-65 G-box-binding factor 2 OS Arabidopsis thaliana GN GBF2 PE 1 SV 1
blastp_uniprot_sprot sp|P42774|GBF1_ARATH 1 306 + 306 Gaps:69 92.38 315 35.74 4e-22 G-box-binding factor 1 OS Arabidopsis thaliana GN GBF1 PE 2 SV 2
blastp_uniprot_sprot sp|P25032|EMBP1_WHEAT 234 304 + 71 none 20.06 354 63.38 1e-18 DNA-binding protein EMBP-1 OS Triticum aestivum PE 1 SV 1
blastp_uniprot_sprot sp|P23922|HBP1A_WHEAT 229 304 + 76 Gaps:2 21.20 349 52.70 1e-14 Transcription factor HBP-1a OS Triticum aestivum PE 2 SV 1
blastp_uniprot_sprot sp|Q99091|CPRF3_PETCR 234 304 + 71 none 23.99 296 47.89 5e-13 Light-inducible protein CPRF3 OS Petroselinum crispum GN CPRF3 PE 2 SV 1
blastp_uniprot_sprot sp|P24068|OCS1_MAIZE 239 312 + 74 Gaps:2 47.68 151 41.67 5e-07 Ocs element-binding factor 1 OS Zea mays GN OBF1 PE 2 SV 2
blastp_uniprot_sprot sp|P12959|OP2_MAIZE 239 311 + 73 Gaps:4 17.00 453 41.56 7e-06 Regulatory protein opaque-2 OS Zea mays GN O2 PE 1 SV 1
rpsblast_cdd gnl|CDD|116391 1 138 + 138 Gaps:53 100.00 189 37.57 1e-28 pfam07777 MFMR G-box binding protein MFMR. This region is found to the N-terminus of the pfam00170 transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A B and C classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals.
rpsblast_cdd gnl|CDD|201054 235 297 + 63 none 98.44 64 60.32 2e-16 pfam00170 bZIP_1 bZIP transcription factor. The Pfam entry includes the basic region and the leucine zipper region.
rpsblast_cdd gnl|CDD|197664 235 298 + 64 none 98.46 65 56.25 4e-16 smart00338 BRLZ basic region leucin zipper.
rpsblast_cdd gnl|CDD|203738 237 288 + 52 Gaps:1 94.44 54 41.18 3e-07 pfam07716 bZIP_2 Basic region leucine zipper.

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 22 73 52 PTHR22952 none none none
SMART 235 299 65 SM00338 none basic region leucin zipper IPR004827
Pfam 235 297 63 PF00170 none bZIP transcription factor IPR004827
PANTHER 102 207 106 PTHR22952:SF6 none none none
PANTHER 22 73 52 PTHR22952:SF6 none none none
ProSiteProfiles 237 300 64 PS50217 none Basic-leucine zipper (bZIP) domain profile. IPR004827
PANTHER 225 305 81 PTHR22952 none none none
PANTHER 102 207 106 PTHR22952 none none none
PANTHER 225 305 81 PTHR22952:SF6 none none none
Pfam 52 137 86 PF07777 none G-box binding protein MFMR IPR012900
Pfam 21 53 33 PF07777 none G-box binding protein MFMR IPR012900
SUPERFAMILY 238 294 57 SSF57959 none none none
Gene3D 229 294 66 G3DSA:1.20.5.170 none none none
ProSitePatterns 242 257 16 PS00036 none Basic-leucine zipper (bZIP) domain signature. IPR004827
Coils 262 304 43 Coil none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8

0 Targeting