Protein : Qrob_P0153960.2 Q. robur
Protein Identifier  ? Qrob_P0153960.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=50) K01051 - pectinesterase [EC:3.1.1.11] Code Enzyme  EC:3.1.1.11
Gene Prediction Quality  validated Protein length 

Sequence

Length: 466  
Kegg Orthology  K01051
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005618 cell wall The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
GO:0030599 pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
GO:0042545 cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
GO:0004857 enzyme inhibitor activity Binds to and stops, prevents or reduces the activity of an enzyme.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1611150 12 465 + 454 Gaps:22 100.00 472 65.68 0.0 Pectinesterase-2 precursor putative (EC:3.1.1.11)
blastp_kegg lcl|pper:PRUPE_ppa004770mg 2 465 + 464 Gaps:25 99.39 492 61.55 0.0 hypothetical protein
blastp_kegg lcl|ath:AT3G60730 8 465 + 458 Gaps:47 97.30 519 57.23 0.0 putative pectinesterase/pectinesterase inhibitor 36
blastp_kegg lcl|pmum:103331735 2 465 + 464 Gaps:23 99.39 490 60.78 0.0 probable pectinesterase/pectinesterase inhibitor 36
blastp_kegg lcl|aly:ARALYDRAFT_486545 8 465 + 458 Gaps:48 97.31 520 57.51 0.0 pectinesterase family protein
blastp_kegg lcl|brp:103841916 8 465 + 458 Gaps:49 97.31 521 56.21 0.0 probable pectinesterase/pectinesterase inhibitor 36
blastp_kegg lcl|eus:EUTSA_v10006472mg 8 465 + 458 Gaps:47 97.30 519 56.04 0.0 hypothetical protein
blastp_kegg lcl|crb:CARUB_v10019247mg 8 465 + 458 Gaps:55 97.34 527 56.14 0.0 hypothetical protein
blastp_kegg lcl|gmx:100792852 3 465 + 463 Gaps:23 99.18 490 57.61 0.0 probable pectinesterase/pectinesterase inhibitor 36-like
blastp_kegg lcl|pvu:PHAVU_010G080300g 15 465 + 451 Gaps:23 96.30 486 59.19 0.0 hypothetical protein
blastp_pdb 1gq8_A 163 465 + 303 Gaps:20 99.37 319 50.79 2e-108 mol:protein length:319 PECTINESTERASE
blastp_pdb 1xg2_A 167 465 + 299 Gaps:20 98.74 317 51.44 4e-108 mol:protein length:317 Pectinesterase 1
blastp_pdb 1qjv_B 168 426 + 259 Gaps:80 92.11 342 32.70 1e-21 mol:protein length:342 PECTIN METHYLESTERASE
blastp_pdb 1qjv_A 168 426 + 259 Gaps:80 92.11 342 32.70 1e-21 mol:protein length:342 PECTIN METHYLESTERASE
blastp_pdb 2ntq_B 168 426 + 259 Gaps:80 92.11 342 32.70 2e-21 mol:protein length:342 Pectinesterase A
blastp_pdb 2ntq_A 168 426 + 259 Gaps:80 92.11 342 32.70 2e-21 mol:protein length:342 Pectinesterase A
blastp_pdb 2ntp_B 168 426 + 259 Gaps:80 92.11 342 32.70 2e-21 mol:protein length:342 Pectinesterase A
blastp_pdb 2ntp_A 168 426 + 259 Gaps:80 92.11 342 32.70 2e-21 mol:protein length:342 Pectinesterase A
blastp_pdb 2ntb_B 168 426 + 259 Gaps:80 92.11 342 32.70 2e-21 mol:protein length:342 Pectinesterase A
blastp_pdb 2ntb_A 168 426 + 259 Gaps:80 92.11 342 32.70 2e-21 mol:protein length:342 Pectinesterase A
blastp_uniprot_sprot sp|Q84R10|PME36_ARATH 8 465 + 458 Gaps:47 97.30 519 57.23 0.0 Probable pectinesterase/pectinesterase inhibitor 36 OS Arabidopsis thaliana GN PME36 PE 2 SV 2
blastp_uniprot_sprot sp|O04887|PME2_CITSI 64 465 + 402 Gaps:44 81.18 510 50.00 8e-130 Pectinesterase 2 OS Citrus sinensis GN PECS-2.1 PE 2 SV 1
blastp_uniprot_sprot sp|O22149|PME17_ARATH 64 465 + 402 Gaps:29 80.82 511 50.61 7e-125 Probable pectinesterase/pectinesterase inhibitor 17 OS Arabidopsis thaliana GN PME17 PE 2 SV 2
blastp_uniprot_sprot sp|O49298|PME6_ARATH 26 465 + 440 Gaps:77 87.18 554 44.72 8e-125 Probable pectinesterase/pectinesterase inhibitor 6 OS Arabidopsis thaliana GN PME6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FHN5|PME59_ARATH 62 465 + 404 Gaps:42 81.34 536 45.64 6e-121 Probable pectinesterase/pectinesterase inhibitor 59 OS Arabidopsis thaliana GN PME59 PE 2 SV 1
blastp_uniprot_sprot sp|P83947|PME1_FICPW 42 465 + 424 Gaps:51 83.49 545 44.62 2e-120 Pectinesterase/pectinesterase inhibitor OS Ficus pumila var. awkeotsang PE 1 SV 1
blastp_uniprot_sprot sp|Q96575|PME22_SOLLC 61 465 + 405 Gaps:39 78.18 550 45.81 4e-120 Pectinesterase 2.2 OS Solanum lycopersicum GN PME2.2 PE 3 SV 1
blastp_uniprot_sprot sp|Q9FK05|PME61_ARATH 2 465 + 464 Gaps:64 85.18 587 41.60 9e-120 Probable pectinesterase/pectinesterase inhibitor 61 OS Arabidopsis thaliana GN PME61 PE 1 SV 1
blastp_uniprot_sprot sp|P09607|PME21_SOLLC 61 465 + 405 Gaps:39 78.18 550 45.81 5e-119 Pectinesterase 2.1 OS Solanum lycopersicum GN PME2.1 PE 2 SV 2
blastp_uniprot_sprot sp|Q96576|PME3_SOLLC 61 465 + 405 Gaps:40 78.86 544 44.06 5e-118 Pectinesterase 3 OS Solanum lycopersicum GN PME3 PE 3 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 3 3 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 26 465 440 PTHR31707 none none none
Gene3D 4 134 131 G3DSA:1.20.140.40 "KEGG:00040+3.1.1.11","KEGG:00500+3.1.1.11","MetaCyc:PWY-1081","MetaCyc:PWY-7246","MetaCyc:PWY-7248","UniPathway:UPA00545" none IPR006501
Phobius 4 15 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
SMART 13 133 121 SM00856 "KEGG:00040+3.1.1.11","KEGG:00500+3.1.1.11","MetaCyc:PWY-1081","MetaCyc:PWY-7246","MetaCyc:PWY-7248","UniPathway:UPA00545" Plant invertase/pectin methylesterase inhibitor IPR006501
SUPERFAMILY 163 461 299 SSF51126 none none IPR011050
Pfam 27 133 107 PF04043 "KEGG:00040+3.1.1.11","KEGG:00500+3.1.1.11","MetaCyc:PWY-1081","MetaCyc:PWY-7246","MetaCyc:PWY-7248","UniPathway:UPA00545" Plant invertase/pectin methylesterase inhibitor IPR006501
Phobius 16 20 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 20 20 SIGNAL_PEPTIDE none Signal peptide region none
ProSitePatterns 298 307 10 PS00503 "KEGG:00040+3.1.1.11","KEGG:00500+3.1.1.11","MetaCyc:PWY-1081","MetaCyc:PWY-7246","MetaCyc:PWY-7248","UniPathway:UPA00545" Pectinesterase signature 2. IPR018040
PANTHER 26 465 440 PTHR31707:SF1 none none none
Phobius 21 465 445 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 168 450 283 PF01095 "KEGG:00040+3.1.1.11","KEGG:00500+3.1.1.11","MetaCyc:PWY-1081","MetaCyc:PWY-7246","MetaCyc:PWY-7248","UniPathway:UPA00545" Pectinesterase IPR000070
SUPERFAMILY 26 135 110 SSF101148 "KEGG:00040+3.1.1.11","KEGG:00500+3.1.1.11","MetaCyc:PWY-1081","MetaCyc:PWY-7246","MetaCyc:PWY-7248","UniPathway:UPA00545" none IPR006501
Gene3D 165 462 298 G3DSA:2.160.20.10 none none IPR012334

3 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 29 28
SignalP_EUK 1 20 19
SignalP_GRAM_NEGATIVE 1 21 20

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 20   Secretory pathway 1 0.975 0.017 NON-PLANT 20