Protein : Qrob_P0153230.2 Q. robur
Protein Identifier  ? Qrob_P0153230.2 Organism . Name  Quercus robur
Score  95.2 Score Type  egn
Protein Description  (M=1) K09598 - signal peptide peptidase-like 3 [EC:3.4.23.-] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 391  
Kegg Orthology  K09598
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0004190 aspartic-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_015188 1 390 + 390 Gaps:19 100.00 371 90.84 0.0 Signal peptide peptidase-like 1 isoform 1
blastp_kegg lcl|pper:PRUPE_ppa007380mg 1 390 + 390 Gaps:20 100.00 370 88.11 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_007G071800g 1 390 + 390 Gaps:19 99.73 372 86.79 0.0 hypothetical protein
blastp_kegg lcl|pxb:103934916 1 390 + 390 Gaps:20 100.00 370 87.30 0.0 signal peptide peptidase-like 1
blastp_kegg lcl|pmum:103333206 1 390 + 390 Gaps:20 100.00 370 87.84 0.0 signal peptide peptidase-like 1
blastp_kegg lcl|cmo:103484087 1 384 + 384 Gaps:20 98.64 369 88.74 0.0 signal peptide peptidase-like 1
blastp_kegg lcl|vvi:100245846 1 390 + 390 Gaps:19 100.00 371 87.06 0.0 signal peptide peptidase-like 3
blastp_kegg lcl|gmx:100786631 1 390 + 390 Gaps:19 99.73 372 86.52 0.0 signal peptide peptidase-like 3-like
blastp_kegg lcl|gmx:100794976 1 390 + 390 Gaps:19 99.73 372 85.98 0.0 signal peptide peptidase-like 1-like
blastp_kegg lcl|rcu:RCOM_1583410 1 390 + 390 Gaps:19 100.00 371 86.52 0.0 D-alanyl-D-alanine endopeptidase putative
blastp_uniprot_sprot sp|Q93Z32|SIPL1_ARATH 1 390 + 390 Gaps:20 100.00 372 83.87 0.0 Signal peptide peptidase-like 1 OS Arabidopsis thaliana GN SPPL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q7G7C7|SIPL1_ORYSJ 1 390 + 390 Gaps:19 100.00 371 74.93 0.0 Signal peptide peptidase-like 1 OS Oryza sativa subsp. japonica GN SPPL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CUS9|SPPL3_MOUSE 17 390 + 374 Gaps:51 95.05 384 35.89 5e-56 Signal peptide peptidase-like 3 OS Mus musculus GN Sppl3 PE 2 SV 3
blastp_uniprot_sprot sp|Q8TCT6|SPPL3_HUMAN 17 390 + 374 Gaps:52 95.06 385 34.43 1e-52 Signal peptide peptidase-like 3 OS Homo sapiens GN SPPL3 PE 1 SV 1
blastp_uniprot_sprot sp|Q8TCT9|HM13_HUMAN 42 389 + 348 Gaps:81 79.84 377 34.55 4e-30 Minor histocompatibility antigen H13 OS Homo sapiens GN HM13 PE 1 SV 1
blastp_uniprot_sprot sp|Q9D8V0|HM13_MOUSE 17 385 + 369 Gaps:95 84.13 378 34.28 7e-29 Minor histocompatibility antigen H13 OS Mus musculus GN Hm13 PE 1 SV 1
blastp_uniprot_sprot sp|Q5Z413|SIPL5_ORYSJ 29 374 + 346 Gaps:94 56.09 542 35.53 6e-27 Signal peptide peptidase-like 5 OS Oryza sativa subsp. japonica GN SPPL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q53P98|SIPL2_ORYSJ 43 389 + 347 Gaps:92 53.75 534 36.24 1e-23 Signal peptide peptidase-like 2 OS Oryza sativa subsp. japonica GN SPPL2 PE 2 SV 1
blastp_uniprot_sprot sp|P49049|IMP2_CAEEL 124 386 + 263 Gaps:57 44.44 468 37.98 2e-23 Intramembrane protease 2 OS Caenorhabditis elegans GN imp-2 PE 1 SV 1
blastp_uniprot_sprot sp|Q3TD49|SPP2B_MOUSE 35 377 + 343 Gaps:76 52.77 578 31.80 2e-23 Signal peptide peptidase-like 2B OS Mus musculus GN Sppl2b PE 2 SV 2
rpsblast_cdd gnl|CDD|202947 51 374 + 324 Gaps:66 97.59 291 37.32 3e-48 pfam04258 Peptidase_A22B Signal peptide peptidase. The members of this family are membrane proteins. In some proteins this region is found associated with pfam02225. This family corresponds with Merops subfamily A22B the type example of which is signal peptide peptidase. There is a sequence-similarity relationship with pfam01080.
rpsblast_cdd gnl|CDD|197847 58 367 + 310 Gaps:74 96.39 249 33.33 1e-28 smart00730 PSN Presenilin signal peptide peptidase family. Presenilin 1 and presenilin 2 are polytopic membrane proteins whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues present in eukaryotes and archaea also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.
rpsblast_kog gnl|CDD|37654 4 390 + 387 Gaps:78 93.65 362 40.12 3e-71 KOG2443 KOG2443 KOG2443 Uncharacterized conserved protein [Function unknown].
rpsblast_kog gnl|CDD|37653 39 378 + 340 Gaps:59 54.16 541 32.76 6e-36 KOG2442 KOG2442 KOG2442 Uncharacterized conserved protein contains PA domain [General function prediction only].

25 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 105 124 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 320 342 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 82 104 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 286 390 105 PTHR12174 none none IPR007369
Phobius 36 55 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 348 366 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 267 299 33 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 300 319 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 343 347 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 145 149 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 168 173 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 174 192 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 77 81 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 50 375 326 PF04258 none Signal peptide peptidase IPR007369
PANTHER 286 390 105 PTHR12174:SF22 none none none
PANTHER 2 266 265 PTHR12174:SF22 none none none
SMART 49 367 319 SM00730 none Presenilin, signal peptide peptidase, family IPR006639
Phobius 56 76 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 193 266 74 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 2 266 265 PTHR12174 none none IPR007369
Phobius 1 13 13 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 150 167 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 125 144 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 14 35 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 367 390 24 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

9 Localization

Analysis Start End Length
TMHMM 128 145 17
TMHMM 174 193 19
TMHMM 273 295 22
TMHMM 58 80 22
TMHMM 320 342 22
TMHMM 347 366 19
TMHMM 149 167 18
TMHMM 15 34 19
TMHMM 84 106 22

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran2_2002_QTL12_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 4,33 33,33 lod 6,5 9,1
Bourran2_2014_nEpis_A4 Qrob_Chr09 9 v_AQ16YP22_198 s_1BM1HR_1387 18,91 18,91 43,71 lod 2,6242 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 142   Secretory pathway 1 0.974 0.011 NON-PLANT 142