Protein : Qrob_P0152080.2 Q. robur
Protein Identifier  ? Qrob_P0152080.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=13) PTHR11064 - CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 177  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_004576 1 174 + 174 Gaps:1 98.86 175 76.88 2e-92 Nuclear transcription factor Y subunit B-5
blastp_kegg lcl|pop:POPTR_0014s12710g 1 176 + 176 Gaps:6 100.00 176 78.41 2e-88 POPTRDRAFT_245906 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa022586mg 1 176 + 176 Gaps:14 100.00 176 80.11 2e-88 hypothetical protein
blastp_kegg lcl|pmum:103333886 1 176 + 176 Gaps:14 100.00 176 78.98 6e-87 nuclear transcription factor Y subunit B-5
blastp_kegg lcl|mdm:103432559 1 176 + 176 Gaps:16 100.00 186 72.04 4e-84 nuclear transcription factor Y subunit B-5
blastp_kegg lcl|mdm:103423117 1 175 + 175 Gaps:14 96.86 191 70.27 3e-81 nuclear transcription factor Y subunit B-5-like
blastp_kegg lcl|gmx:100796514 1 140 + 140 Gaps:1 97.24 145 82.27 7e-78 nuclear transcription factor Y subunit B-5-like
blastp_kegg lcl|gmx:100817274 3 144 + 142 Gaps:1 97.28 147 79.72 2e-77 nuclear transcription factor Y subunit B-5-like
blastp_kegg lcl|pvu:PHAVU_007G165100g 4 145 + 142 Gaps:4 96.69 151 78.08 1e-75 hypothetical protein
blastp_kegg lcl|fve:101303182 1 176 + 176 Gaps:13 100.00 185 67.57 6e-75 nuclear transcription factor Y subunit B-5-like
blastp_pdb 1n1j_A 32 122 + 91 none 97.85 93 65.93 1e-41 mol:protein length:93 NF-YB
blastp_pdb 1jfi_B 22 131 + 110 Gaps:6 58.10 179 31.73 3e-13 mol:protein length:179 Transcription Regulator NC2 beta chain
blastp_pdb 2bym_D 34 121 + 88 none 68.75 128 36.36 4e-12 mol:protein length:128 CHRAC-14
blastp_pdb 2bym_B 34 121 + 88 none 68.75 128 36.36 4e-12 mol:protein length:128 CHRAC-14
blastp_pdb 2byk_D 34 121 + 88 none 68.75 128 36.36 4e-12 mol:protein length:128 CHRAC-14
blastp_pdb 2byk_B 34 121 + 88 none 68.75 128 36.36 4e-12 mol:protein length:128 CHRAC-14
blastp_uniprot_sprot sp|O82248|NFYB5_ARATH 27 127 + 101 none 63.12 160 84.16 4e-59 Nuclear transcription factor Y subunit B-5 OS Arabidopsis thaliana GN NFYB5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FGJ3|NFYB2_ARATH 32 127 + 96 none 50.53 190 80.21 2e-52 Nuclear transcription factor Y subunit B-2 OS Arabidopsis thaliana GN NFYB2 PE 2 SV 1
blastp_uniprot_sprot sp|O04027|NFYB4_ARATH 31 174 + 144 Gaps:7 100.00 139 61.15 2e-52 Nuclear transcription factor Y subunit B-4 OS Arabidopsis thaliana GN NFYB4 PE 1 SV 1
blastp_uniprot_sprot sp|O23310|NFYB3_ARATH 26 127 + 102 none 63.35 161 72.55 1e-51 Nuclear transcription factor Y subunit B-3 OS Arabidopsis thaliana GN NFYB3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SLG0|NFYB1_ARATH 19 150 + 132 Gaps:7 92.91 141 64.12 5e-50 Nuclear transcription factor Y subunit B-1 OS Arabidopsis thaliana GN NFYB1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SIT9|NFYB7_ARATH 32 132 + 101 none 46.98 215 73.27 5e-50 Nuclear transcription factor Y subunit B-7 OS Arabidopsis thaliana GN NFYB7 PE 2 SV 1
blastp_uniprot_sprot sp|P25209|NFYB_MAIZE 31 142 + 112 none 62.57 179 63.39 6e-50 Nuclear transcription factor Y subunit B OS Zea mays GN NFY2 PE 2 SV 1
blastp_uniprot_sprot sp|Q67XJ2|NFYBA_ARATH 31 141 + 111 none 63.07 176 65.77 9e-50 Nuclear transcription factor Y subunit B-10 OS Arabidopsis thaliana GN NFYB10 PE 2 SV 1
blastp_uniprot_sprot sp|Q60EQ4|NFYB3_ORYSJ 31 142 + 112 none 60.54 185 62.50 3e-49 Nuclear transcription factor Y subunit B-3 OS Oryza sativa subsp. japonica GN NFYB3 PE 1 SV 2
blastp_uniprot_sprot sp|Q8VYK4|NFYB8_ARATH 31 141 + 111 none 64.16 173 64.86 3e-49 Nuclear transcription factor Y subunit B-8 OS Arabidopsis thaliana GN NFYB8 PE 2 SV 1
rpsblast_cdd gnl|CDD|201453 36 101 + 66 Gaps:1 100.00 65 52.31 8e-22 pfam00808 CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone. This family includes archaebacterial histones and histone like transcription factors from eukaryotes.
rpsblast_cdd gnl|CDD|32219 29 111 + 83 Gaps:2 89.01 91 34.57 2e-14 COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics].
rpsblast_cdd gnl|CDD|34751 38 131 + 94 none 63.51 148 28.72 9e-11 COG5150 COG5150 Class 2 transcription repressor NC2 beta subunit (Dr1) [Transcription].
rpsblast_kog gnl|CDD|36087 7 146 + 140 none 83.33 168 58.57 1e-49 KOG0869 KOG0869 KOG0869 CCAAT-binding factor subunit A (HAP3) [Transcription].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 34 145 112 SSF47113 none none IPR009072
Gene3D 28 146 119 G3DSA:1.10.20.10 none none IPR009072
PANTHER 3 172 170 PTHR11064 none none none
ProSitePatterns 68 84 17 PS00685 none NF-YB/HAP3 subunit signature. IPR003956
Pfam 37 101 65 PF00808 none Histone-like transcription factor (CBF/NF-Y) and archaeal histone IPR003958
PRINTS 103 121 19 PR00615 none CCAAT-binding transcription factor subunit A signature none
PRINTS 84 102 19 PR00615 none CCAAT-binding transcription factor subunit A signature none
PRINTS 65 83 19 PR00615 none CCAAT-binding transcription factor subunit A signature none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting