Protein : Qrob_P0146560.2 Q. robur
Protein Identifier  ? Qrob_P0146560.2 Organism . Name  Quercus robur
Score  96.0 Score Type  egn
Protein Description  (M=1) KOG0250//KOG0979 - DNA repair protein RAD18 (SMC family protein) [Replication recombination and repair]. // Structural maintenance of chromosome protein SMC5/Spr18 SMC superfamily [Chromatin structure and dynamics Cell cycle control cell division chromosome partitioning Replication recombination and repair]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 159  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0000724 double-strand break repair via homologous recombination The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
GO:0030915 Smc5-Smc6 complex A conserved complex that contains a heterodimer of SMC proteins (Smc5p and Smc6p, or homologs thereof) and several other proteins, and is involved in DNA repair and maintaining cell cycle arrest following DNA damage. In S. cerevisiae, this is an octameric complex called Mms21-Smc5-Smc6 complex, with at least five of its subunits conserved in fission yeast and humans.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa026132mg 12 156 + 145 Gaps:2 35.17 418 80.95 6e-82 hypothetical protein
blastp_kegg lcl|cic:CICLE_v100042042m 16 156 + 141 none 29.13 484 80.85 7e-78 hypothetical protein
blastp_kegg lcl|pmum:103333367 12 156 + 145 Gaps:2 13.96 1053 80.27 4e-77 structural maintenance of chromosomes protein 6B
blastp_kegg lcl|brp:103860596 10 156 + 147 none 13.91 1057 78.23 2e-76 structural maintenance of chromosomes protein 6B
blastp_kegg lcl|vvi:100249449 1 156 + 156 Gaps:1 14.66 1057 76.13 1e-74 structural maintenance of chromosomes protein 6-like
blastp_kegg lcl|ath:AT5G07660 9 156 + 148 none 13.99 1058 74.32 5e-74 SMC6A structural maintenance of chromosomes 6A
blastp_kegg lcl|cit:102612928 1 156 + 156 Gaps:1 14.65 1058 76.13 1e-73 structural maintenance of chromosomes protein 6B-like
blastp_kegg lcl|aly:ARALYDRAFT_487601 7 156 + 150 none 14.11 1063 72.00 3e-73 structural maintenance of chromosomes family protein
blastp_kegg lcl|pop:POPTR_0003s10690g 1 156 + 156 Gaps:2 14.91 1046 73.08 5e-73 POPTRDRAFT_830778 hypothetical protein
blastp_kegg lcl|pxb:103961941 12 156 + 145 Gaps:2 13.89 1058 78.23 1e-72 structural maintenance of chromosomes protein 6B-like
blastp_pdb 1ii8_A 23 101 + 79 Gaps:6 39.49 195 33.77 4e-06 mol:protein length:195 Rad50 ABC-ATPase
blastp_pdb 1us8_A 23 101 + 79 Gaps:6 52.38 147 33.77 4e-06 mol:protein length:147 DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE
blastp_pdb 1f2u_C 23 101 + 79 Gaps:6 51.68 149 33.77 4e-06 mol:protein length:149 RAD50 ABC-ATPASE
blastp_pdb 1f2u_A 23 101 + 79 Gaps:6 51.68 149 33.77 4e-06 mol:protein length:149 RAD50 ABC-ATPASE
blastp_pdb 1f2t_A 23 101 + 79 Gaps:6 51.68 149 33.77 4e-06 mol:protein length:149 RAD50 ABC-ATPASE
blastp_pdb 3qks_A 23 101 + 79 Gaps:6 37.93 203 33.77 4e-06 mol:protein length:203 DNA double-strand break repair rad50 ATPase
blastp_pdb 3qkr_A 23 101 + 79 Gaps:6 37.93 203 33.77 4e-06 mol:protein length:203 DNA double-strand break repair rad50 ATPase
blastp_pdb 3qku_B 23 88 + 66 Gaps:6 17.83 359 39.06 5e-06 mol:protein length:359 DNA double-strand break repair rad50 ATPase
blastp_pdb 3qku_A 23 88 + 66 Gaps:6 17.83 359 39.06 5e-06 mol:protein length:359 DNA double-strand break repair rad50 ATPase
blastp_pdb 3qkt_D 23 88 + 66 Gaps:6 18.88 339 39.06 6e-06 mol:protein length:339 DNA double-strand break repair rad50 ATPase
blastp_uniprot_sprot sp|Q9FLR5|SMC6A_ARATH 9 156 + 148 none 13.99 1058 74.32 2e-75 Structural maintenance of chromosomes protein 6A OS Arabidopsis thaliana GN SMC6A PE 2 SV 1
blastp_uniprot_sprot sp|Q9FII7|SMC6B_ARATH 13 156 + 144 none 13.62 1057 75.69 1e-72 Structural maintenance of chromosomes protein 6B OS Arabidopsis thaliana GN SMC6B PE 2 SV 1
blastp_uniprot_sprot sp|Q54I56|SMC6_DICDI 20 155 + 136 Gaps:1 11.56 1185 45.99 2e-36 Structural maintenance of chromosomes protein 6 OS Dictyostelium discoideum GN smc6 PE 3 SV 1
blastp_uniprot_sprot sp|Q802R8|SMC6_TAKRU 18 155 + 138 Gaps:2 12.84 1090 47.86 5e-36 Structural maintenance of chromosomes protein 6 OS Takifugu rubripes GN smc6 PE 2 SV 1
blastp_uniprot_sprot sp|Q6P9I7|SMC6_XENLA 21 155 + 135 Gaps:2 12.15 1128 44.53 1e-32 Structural maintenance of chromosomes protein 6 OS Xenopus laevis GN smc6 PE 2 SV 1
blastp_uniprot_sprot sp|Q924W5|SMC6_MOUSE 18 155 + 138 Gaps:2 12.76 1097 44.29 1e-32 Structural maintenance of chromosomes protein 6 OS Mus musculus GN Smc6 PE 2 SV 1
blastp_uniprot_sprot sp|Q96SB8|SMC6_HUMAN 18 155 + 138 Gaps:2 12.83 1091 45.00 5e-32 Structural maintenance of chromosomes protein 6 OS Homo sapiens GN SMC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q12749|SMC6_YEAST 18 155 + 138 Gaps:1 12.48 1114 41.01 2e-31 Structural maintenance of chromosomes protein 6 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN SMC6 PE 1 SV 1
blastp_uniprot_sprot sp|P53692|SMC6_SCHPO 21 155 + 135 Gaps:1 11.93 1140 41.18 3e-30 Structural maintenance of chromosomes protein 6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN smc6 PE 1 SV 1
blastp_uniprot_sprot sp|O13710|SMC5_SCHPO 14 155 + 142 Gaps:13 11.99 1076 27.13 4e-10 Structural maintenance of chromosomes protein 5 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN smc5 PE 1 SV 3

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 3 155 153 PTHR19306 none none none
Gene3D 22 153 132 G3DSA:3.40.50.300 none none IPR027417
PANTHER 3 155 153 PTHR19306:SF2 none none IPR027132
SUPERFAMILY 22 156 135 SSF52540 none none IPR027417
Pfam 26 149 124 PF13476 none AAA domain none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 17   Mitochondrion 2 0.052 0.827 NON-PLANT 17