Protein : Qrob_P0145180.2 Q. robur
Protein Identifier  ? Qrob_P0145180.2 Organism . Name  Quercus robur
Score  79.1 Score Type  egn
Protein Description  (M=3) PF00319//PF01486 - SRF-type transcription factor (DNA-binding and dimerisation domain) // K-box region Gene Prediction Quality  validated
Protein length 

Sequence

Length: 218  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0006s04730g 32 175 + 144 Gaps:1 63.60 228 71.72 2e-64 POPTRDRAFT_762094 AGL15 family protein
blastp_kegg lcl|gmx:100792278 32 175 + 144 Gaps:8 59.11 247 74.66 2e-63 agamous-like MADS-box protein AGL18-like
blastp_kegg lcl|pvu:PHAVU_007G251600g 32 175 + 144 Gaps:6 59.11 247 73.29 2e-63 hypothetical protein
blastp_kegg lcl|mdm:103454458 29 173 + 145 Gaps:5 85.71 175 69.33 2e-62 agamous-like MADS-box protein AGL18
blastp_kegg lcl|mdm:103415023 29 173 + 145 Gaps:5 56.39 266 69.33 3e-61 agamous-like MADS-box protein AGL18
blastp_kegg lcl|pxb:103953187 29 173 + 145 Gaps:5 56.39 266 68.00 4e-60 agamous-like MADS-box protein AGL18
blastp_kegg lcl|pxb:103927947 29 173 + 145 Gaps:5 56.39 266 68.00 2e-59 agamous-like MADS-box protein AGL18
blastp_kegg lcl|vvi:100252077 32 175 + 144 Gaps:5 58.20 256 67.79 3e-59 agamous-like MADS-box protein AGL15-like
blastp_kegg lcl|cit:102612844 32 200 + 169 Gaps:11 64.82 253 62.80 3e-59 agamous-like MADS-box protein AGL18-like
blastp_kegg lcl|cic:CICLE_v10005698mg 32 198 + 167 Gaps:4 66.80 253 60.95 5e-59 hypothetical protein
blastp_pdb 1egw_D 33 112 + 80 Gaps:3 100.00 77 51.95 1e-19 mol:protein length:77 MADS BOX TRANSCRIPTION ENHANCER FACTOR 2 POL
blastp_pdb 1egw_C 33 112 + 80 Gaps:3 100.00 77 51.95 1e-19 mol:protein length:77 MADS BOX TRANSCRIPTION ENHANCER FACTOR 2 POL
blastp_pdb 1egw_B 33 112 + 80 Gaps:3 100.00 77 51.95 1e-19 mol:protein length:77 MADS BOX TRANSCRIPTION ENHANCER FACTOR 2 POL
blastp_pdb 1egw_A 33 112 + 80 Gaps:3 100.00 77 51.95 1e-19 mol:protein length:77 MADS BOX TRANSCRIPTION ENHANCER FACTOR 2 POL
blastp_pdb 3p57_J 33 121 + 89 Gaps:3 95.56 90 47.67 1e-19 mol:protein length:90 Myocyte-specific enhancer factor 2A
blastp_pdb 3p57_I 33 121 + 89 Gaps:3 95.56 90 47.67 1e-19 mol:protein length:90 Myocyte-specific enhancer factor 2A
blastp_pdb 3p57_D 33 121 + 89 Gaps:3 95.56 90 47.67 1e-19 mol:protein length:90 Myocyte-specific enhancer factor 2A
blastp_pdb 3p57_C 33 121 + 89 Gaps:3 95.56 90 47.67 1e-19 mol:protein length:90 Myocyte-specific enhancer factor 2A
blastp_pdb 3p57_B 33 121 + 89 Gaps:3 95.56 90 47.67 1e-19 mol:protein length:90 Myocyte-specific enhancer factor 2A
blastp_pdb 3p57_A 33 121 + 89 Gaps:3 95.56 90 47.67 1e-19 mol:protein length:90 Myocyte-specific enhancer factor 2A
blastp_uniprot_sprot sp|Q38847|AGL15_ARATH 32 175 + 144 Gaps:7 51.12 268 58.39 5e-44 Agamous-like MADS-box protein AGL15 OS Arabidopsis thaliana GN AGL15 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M2K8|AGL18_ARATH 32 175 + 144 Gaps:7 58.98 256 52.98 3e-42 Agamous-like MADS-box protein AGL18 OS Arabidopsis thaliana GN AGL18 PE 2 SV 1
blastp_uniprot_sprot sp|Q39295|AGL15_BRANA 32 173 + 142 Gaps:2 53.79 264 57.75 2e-41 Agamous-like MADS-box protein AGL15 OS Brassica napus GN AGL15 PE 3 SV 1
blastp_uniprot_sprot sp|Q38837|AGL13_ARATH 32 175 + 144 Gaps:16 58.20 244 52.82 2e-37 Agamous-like MADS-box protein AGL13 OS Arabidopsis thaliana GN AGL13 PE 2 SV 2
blastp_uniprot_sprot sp|P29386|AGL6_ARATH 32 175 + 144 Gaps:9 56.75 252 50.35 8e-36 Agamous-like MADS-box protein AGL6 OS Arabidopsis thaliana GN AGL6 PE 1 SV 2
blastp_uniprot_sprot sp|O82743|AGL19_ARATH 32 173 + 142 Gaps:1 64.38 219 48.23 4e-35 Agamous-like MADS-box protein AGL19 OS Arabidopsis thaliana GN AGL19 PE 1 SV 1
blastp_uniprot_sprot sp|Q43585|AG_TOBAC 25 175 + 151 none 60.89 248 45.03 8e-35 Floral homeotic protein AGAMOUS OS Nicotiana tabacum GN AG1 PE 2 SV 1
blastp_uniprot_sprot sp|A2RVQ5|AGL16_ARATH 32 175 + 144 Gaps:5 59.58 240 51.05 3e-34 Agamous-like MADS-box protein AGL16 OS Arabidopsis thaliana GN AGL16 PE 1 SV 1
blastp_uniprot_sprot sp|Q38838|AGL14_ARATH 32 173 + 142 Gaps:2 64.25 221 48.59 4e-34 Agamous-like MADS-box protein AGL14 OS Arabidopsis thaliana GN AGL14 PE 1 SV 2
blastp_uniprot_sprot sp|Q40872|AG_PANGI 26 175 + 150 Gaps:2 61.98 242 45.33 5e-34 Floral homeotic protein AGAMOUS OS Panax ginseng GN AG2 PE 2 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 214 217 4 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 118 176 59 PF01486 none K-box region IPR002487
Phobius 192 213 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 191 191 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSitePatterns 34 88 55 PS00350 "Reactome:REACT_21303" MADS-box domain signature. IPR002100
Pfam 40 90 51 PF00319 "Reactome:REACT_21303" SRF-type transcription factor (DNA-binding and dimerisation domain) IPR002100
PANTHER 32 175 144 PTHR11945 none none none
ProSiteProfiles 118 217 100 PS51297 none K-box domain profile. IPR002487
SMART 32 91 60 SM00432 "Reactome:REACT_21303" none IPR002100
ProSiteProfiles 32 92 61 PS50066 "Reactome:REACT_21303" MADS-box domain profile. IPR002100
PANTHER 32 175 144 PTHR11945:SF148 none none none
PRINTS 34 54 21 PR00404 "Reactome:REACT_21303" MADS domain signature IPR002100
PRINTS 54 69 16 PR00404 "Reactome:REACT_21303" MADS domain signature IPR002100
PRINTS 69 90 22 PR00404 "Reactome:REACT_21303" MADS domain signature IPR002100
SUPERFAMILY 33 114 82 SSF55455 "Reactome:REACT_21303" none IPR002100

2 Localization

Analysis Start End Length
SignalP_EUK 1 19 18
TMHMM 192 214 22

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 19   Secretory pathway 3 0.730 0.098 NON-PLANT 19