Protein : Qrob_P0139590.2 Q. robur
Protein Identifier  ? Qrob_P0139590.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0483//KOG0487//KOG0488//KOG0494//KOG0842//KOG0843//KOG2251 - Transcription factor HEX contains HOX and HALZ domains [Transcription]. // Transcription factor Abd-B contains HOX domain [Transcription]. // Transcription factor BarH and related HOX domain proteins [General function prediction only]. // Transcription factor CHX10 and related HOX domain proteins [General function prediction only]. // Transcription factor tinman/NKX2-3 contains HOX domain [Transcription]. // Transcription factor EMX1 and related HOX domain proteins [Transcription]. // Homeobox transcription factor [Transcription]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 450  
Kegg Orthology  K09338
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0043565 sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0008289 lipid binding Interacting selectively and non-covalently with a lipid.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_005412 1 363 + 363 Gaps:1 44.20 819 85.64 0.0 HD domain class transcription factor isoform 1
blastp_kegg lcl|pop:POPTR_0014s07130g 1 375 + 375 Gaps:2 45.57 823 82.67 0.0 POPTRDRAFT_774292 homeodomain family protein
blastp_kegg lcl|pper:PRUPE_ppa001436mg 1 354 + 354 Gaps:6 42.46 829 88.64 0.0 hypothetical protein
blastp_kegg lcl|pmum:103331851 1 354 + 354 Gaps:6 42.46 829 88.64 0.0 homeobox-leucine zipper protein ANTHOCYANINLESS 2
blastp_kegg lcl|rcu:RCOM_1613930 1 354 + 354 Gaps:4 42.91 825 87.57 0.0 homeobox protein putative
blastp_kegg lcl|vvi:100260889 1 354 + 354 Gaps:3 43.28 811 86.32 0.0 homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
blastp_kegg lcl|pxb:103941477 1 354 + 354 Gaps:7 60.00 585 85.47 0.0 homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
blastp_kegg lcl|mdm:103445972 1 354 + 354 Gaps:6 42.72 824 85.80 0.0 HD3 homeobox-leucine zipper protein ANTHOCYANINLESS 2
blastp_kegg lcl|pop:POPTR_0002s15610g 1 376 + 376 Gaps:3 45.73 820 81.07 0.0 POPTRDRAFT_552123 homeodomain family protein
blastp_kegg lcl|cmo:103499061 1 354 + 354 Gaps:8 41.90 840 85.80 0.0 homeobox-leucine zipper protein ANTHOCYANINLESS 2
blastp_pdb 1hom_A 68 126 + 59 none 86.76 68 38.98 6e-06 mol:protein length:68 ANTENNAPEDIA PROTEIN
blastp_pdb 3a01_F 66 126 + 61 Gaps:2 94.03 67 38.10 7e-06 mol:protein length:67 Homeobox protein aristaless
blastp_pdb 3a01_B 66 126 + 61 Gaps:2 94.03 67 38.10 7e-06 mol:protein length:67 Homeobox protein aristaless
blastp_pdb 1b8i_A 68 128 + 61 none 75.31 81 34.43 9e-06 mol:protein length:81 PROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV)
blastp_uniprot_sprot sp|Q0WV12|ANL2_ARATH 4 354 + 351 Gaps:32 42.02 802 70.03 5e-148 Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS Arabidopsis thaliana GN ANL2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M2E8|HDG1_ARATH 4 354 + 351 Gaps:20 42.95 808 64.27 2e-130 Homeobox-leucine zipper protein HDG1 OS Arabidopsis thaliana GN HDG1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6EPF0|ROC5_ORYSJ 2 363 + 362 Gaps:20 47.26 804 58.42 6e-125 Homeobox-leucine zipper protein ROC5 OS Oryza sativa subsp. japonica GN ROC5 PE 2 SV 1
blastp_uniprot_sprot sp|Q7Y0V7|ROC6_ORYSJ 4 354 + 351 Gaps:30 43.46 872 59.63 1e-119 Homeobox-leucine zipper protein ROC6 OS Oryza sativa subsp. japonica GN ROC6 PE 2 SV 2
blastp_uniprot_sprot sp|Q7Y0V9|ROC4_ORYSJ 1 391 + 391 Gaps:51 52.15 813 51.65 4e-119 Homeobox-leucine zipper protein ROC4 OS Oryza sativa subsp. japonica GN ROC4 PE 2 SV 2
blastp_uniprot_sprot sp|Q93V99|PDF2_ARATH 38 353 + 316 Gaps:22 40.11 743 52.35 3e-91 Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS Arabidopsis thaliana GN PDF2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RWU4|ATML1_ARATH 12 353 + 342 Gaps:30 44.09 762 52.08 5e-91 Homeobox-leucine zipper protein MERISTEM L1 OS Arabidopsis thaliana GN ATML1 PE 2 SV 1
blastp_uniprot_sprot sp|Q0J9X2|ROC2_ORYSJ 41 354 + 314 Gaps:31 38.14 784 51.84 1e-87 Homeobox-leucine zipper protein ROC2 OS Oryza sativa subsp. japonica GN ROC2 PE 2 SV 1
blastp_uniprot_sprot sp|A2YR02|ROC7_ORYSI 35 353 + 319 Gaps:44 38.85 749 56.01 5e-87 Homeobox-leucine zipper protein ROC7 OS Oryza sativa subsp. indica GN ROC7 PE 3 SV 1
blastp_uniprot_sprot sp|Q6ZAR0|ROC1_ORYSJ 17 353 + 337 Gaps:39 39.54 784 53.55 1e-86 Homeobox-leucine zipper protein ROC1 OS Oryza sativa subsp. japonica GN ROC1 PE 2 SV 1
rpsblast_cdd gnl|CDD|176884 273 353 + 81 none 35.37 229 56.79 4e-27 cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
rpsblast_cdd gnl|CDD|200956 69 124 + 56 none 98.25 57 42.86 6e-18 pfam00046 Homeobox Homeobox domain.
rpsblast_cdd gnl|CDD|197696 67 124 + 58 Gaps:1 100.00 57 49.12 2e-13 smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes.
rpsblast_cdd gnl|CDD|28970 69 126 + 58 none 98.31 59 44.83 3e-12 cd00086 homeodomain Homeodomain DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes may bind to DNA as monomers or as homo- and/or heterodimers in a sequence-specific manner..
rpsblast_cdd gnl|CDD|202011 278 353 + 76 Gaps:12 31.22 205 46.88 2e-08 pfam01852 START START domain.
rpsblast_cdd gnl|CDD|35135 60 143 + 84 Gaps:2 52.56 156 31.71 1e-07 COG5576 COG5576 Homeodomain-containing transcription factor [Transcription].

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 278 354 77 PF01852 none START domain IPR002913
PANTHER 273 354 82 PTHR24325 none none none
ProSiteProfiles 66 126 61 PS50071 none 'Homeobox' domain profile. IPR001356
SMART 67 130 64 SM00389 none Homeodomain IPR001356
Pfam 69 124 56 PF00046 none Homeobox domain IPR001356
ProSiteProfiles 269 353 85 PS50848 none START domain profile. IPR002913
Coils 120 153 34 Coil none none none
PANTHER 16 227 212 PTHR24325 none none none
SUPERFAMILY 50 126 77 SSF46689 none none IPR009057
PANTHER 273 354 82 PTHR24325:SF17 none none none
PANTHER 16 227 212 PTHR24325:SF17 none none none
ProSitePatterns 101 124 24 PS00027 none 'Homeobox' domain signature. IPR017970
Gene3D 56 126 71 G3DSA:1.10.10.60 none none IPR009057

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting