Protein : Qrob_P0139480.2 Q. robur
Protein Identifier  ? Qrob_P0139480.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K03008 - DNA-directed RNA polymerase II subunit RPB11 Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 117  
Kegg Orthology  K03008
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100259467 1 116 + 116 none 100.00 116 92.24 3e-76 DNA-directed RNA polymerase II subunit RPB11-like
blastp_kegg lcl|mdm:103418929 1 116 + 116 none 100.00 116 93.10 7e-76 DNA-directed RNA polymerases II IV and V subunit 11
blastp_kegg lcl|pxb:103964138 1 116 + 116 none 100.00 116 93.10 9e-76 DNA-directed RNA polymerases II IV and V subunit 11
blastp_kegg lcl|mdm:103449810 1 116 + 116 none 100.00 116 93.10 9e-76 DNA-directed RNA polymerases II IV and V subunit 11
blastp_kegg lcl|pmum:103335510 1 116 + 116 none 100.00 116 93.10 3e-75 DNA-directed RNA polymerases II IV and V subunit 11
blastp_kegg lcl|pper:PRUPE_ppa013559mg 1 116 + 116 none 100.00 116 93.10 3e-75 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_011G010100g 1 116 + 116 none 100.00 116 90.52 1e-74 hypothetical protein
blastp_kegg lcl|csv:101216683 1 116 + 116 none 100.00 116 92.24 1e-74 DNA-directed RNA polymerase II subunit RPB11-like
blastp_kegg lcl|cmo:103500319 1 116 + 116 none 100.00 116 92.24 2e-74 DNA-directed RNA polymerases II IV and V subunit 11
blastp_kegg lcl|gmx:100527865 1 116 + 116 none 100.00 116 90.52 4e-74 uncharacterized LOC100527865
blastp_pdb 4a93_K 1 109 + 109 none 90.83 120 45.87 3e-27 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3m_K 1 109 + 109 none 90.83 120 45.87 3e-27 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3l_K 1 109 + 109 none 90.83 120 45.87 3e-27 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3k_K 1 109 + 109 none 90.83 120 45.87 3e-27 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3j_K 1 109 + 109 none 90.83 120 45.87 3e-27 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3i_K 1 109 + 109 none 90.83 120 45.87 3e-27 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3g_K 1 109 + 109 none 90.83 120 45.87 3e-27 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3f_K 1 109 + 109 none 90.83 120 45.87 3e-27 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3e_K 1 109 + 109 none 90.83 120 45.87 3e-27 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_pdb 4a3d_K 1 109 + 109 none 90.83 120 45.87 3e-27 mol:protein length:120 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
blastp_uniprot_sprot sp|Q38859|NRPBB_ARATH 1 116 + 116 none 100.00 116 87.07 2e-72 DNA-directed RNA polymerases II IV and V subunit 11 OS Arabidopsis thaliana GN NRPB11 PE 1 SV 1
blastp_uniprot_sprot sp|P52435|RPB11_HUMAN 1 105 + 105 none 89.74 117 54.29 2e-36 DNA-directed RNA polymerase II subunit RPB11-a OS Homo sapiens GN POLR2J PE 1 SV 1
blastp_uniprot_sprot sp|Q32P79|RPB11_BOVIN 1 105 + 105 none 89.74 117 54.29 2e-36 DNA-directed RNA polymerase II subunit RPB11 OS Bos taurus GN POLR2J PE 3 SV 1
blastp_uniprot_sprot sp|O08740|RPB11_MOUSE 1 105 + 105 none 89.74 117 54.29 2e-36 DNA-directed RNA polymerase II subunit RPB11 OS Mus musculus GN Polr2j PE 2 SV 1
blastp_uniprot_sprot sp|Q9VJE4|RPB11_DROME 1 106 + 106 none 90.60 117 54.72 3e-36 DNA-directed RNA polymerase II subunit RPB11 OS Drosophila melanogaster GN Rpb11 PE 3 SV 1
blastp_uniprot_sprot sp|Q86JJ5|RPB11_DICDI 1 111 + 111 none 92.50 120 47.75 3e-36 DNA-directed RNA polymerase II subunit rpb11 OS Dictyostelium discoideum GN polr2j PE 3 SV 1
blastp_uniprot_sprot sp|Q7PVQ9|RPB11_ANOGA 1 109 + 109 none 93.16 117 54.13 6e-36 DNA-directed RNA polymerase II subunit RPB11 OS Anopheles gambiae GN Rpb11 PE 3 SV 2
blastp_uniprot_sprot sp|Q9GZM3|RPB1B_HUMAN 1 109 + 109 Gaps:1 93.91 115 52.78 4e-35 DNA-directed RNA polymerase II subunit RPB11-b1 OS Homo sapiens GN POLR2J2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9H1A7|RPB1C_HUMAN 1 109 + 109 Gaps:1 93.91 115 51.85 1e-34 DNA-directed RNA polymerase II subunit RPB11-b2 OS Homo sapiens GN POLR2J3 PE 3 SV 1
blastp_uniprot_sprot sp|Q60SM4|RPB11_CAEBR 1 114 + 114 Gaps:1 92.62 122 48.67 2e-32 Probable DNA-directed RNA polymerase II subunit RPB11 OS Caenorhabditis briggsae GN rpb-11 PE 3 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 84 105 22 Coil none none none
Pfam 29 105 77 PF13656 none RNA polymerase Rpb3/Rpb11 dimerisation domain none
ProSitePatterns 35 66 32 PS01154 none RNA polymerases L / 13 to 16 Kd subunits signature. IPR008193
Gene3D 1 114 114 G3DSA:3.30.1360.10 none none none
SUPERFAMILY 1 111 111 SSF55257 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" none IPR009025
PANTHER 1 115 115 PTHR13946 none none none

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting