Protein : Qrob_P0139410.2 Q. robur
Protein Identifier  ? Qrob_P0139410.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=5) K03164 - DNA topoisomerase II [EC:5.99.1.3] Code Enzyme  EC:5.99.1.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 504  
Kegg Orthology  K03164
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pda:103698181 1 330 + 330 Gaps:14 55.73 567 71.84 2e-144 DNA topoisomerase 2-like
blastp_kegg lcl|brp:103853975 1 486 + 486 Gaps:44 27.34 1412 74.35 1e-143 DNA topoisomerase 2
blastp_kegg lcl|pop:POPTR_0009s06380g 1 495 + 495 Gaps:38 33.00 1482 67.89 5e-141 POPTRDRAFT_557797 DNA topoisomerase family protein
blastp_kegg lcl|mdm:103407514 1 286 + 286 Gaps:12 37.53 730 79.93 2e-140 DNA topoisomerase 2-like
blastp_kegg lcl|pmum:103330635 1 494 + 494 Gaps:42 30.93 1471 73.85 2e-140 DNA topoisomerase 2
blastp_kegg lcl|vvi:100253371 1 488 + 488 Gaps:34 33.92 1489 68.51 6e-140 DNA topoisomerase 2-like
blastp_kegg lcl|pper:PRUPE_ppa000202mg 1 494 + 494 Gaps:45 32.49 1471 70.29 1e-139 hypothetical protein
blastp_kegg lcl|eus:EUTSA_v10024219mg 1 485 + 485 Gaps:22 24.39 1427 74.14 4e-139 hypothetical protein
blastp_kegg lcl|atr:s00103p00101630 1 495 + 495 Gaps:36 29.83 1505 66.37 6e-139 AMTR_s00103p00101630 hypothetical protein
blastp_kegg lcl|crb:CARUB_v10012826mg 1 291 + 291 Gaps:13 21.65 1284 76.98 8e-139 hypothetical protein
blastp_pdb 1zxn_D 16 241 + 226 Gaps:14 53.50 400 51.87 3e-67 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_pdb 1zxn_C 16 241 + 226 Gaps:14 53.50 400 51.87 3e-67 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_pdb 1zxn_B 16 241 + 226 Gaps:14 53.50 400 51.87 3e-67 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_pdb 1zxn_A 16 241 + 226 Gaps:14 53.50 400 51.87 3e-67 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_pdb 1zxm_B 16 241 + 226 Gaps:14 53.50 400 51.87 3e-67 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_pdb 1zxm_A 16 241 + 226 Gaps:14 53.50 400 51.87 3e-67 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_pdb 1qzr_B 1 203 + 203 Gaps:13 50.72 418 42.45 3e-47 mol:protein length:418 DNA topoisomerase II
blastp_pdb 1qzr_A 1 203 + 203 Gaps:13 50.72 418 42.45 3e-47 mol:protein length:418 DNA topoisomerase II
blastp_pdb 1pvg_B 1 203 + 203 Gaps:13 50.72 418 42.45 3e-47 mol:protein length:418 DNA topoisomerase II
blastp_pdb 1pvg_A 1 203 + 203 Gaps:13 50.72 418 42.45 3e-47 mol:protein length:418 DNA topoisomerase II
blastp_uniprot_sprot sp|O24308|TOP2_PEA 1 479 + 479 Gaps:33 32.15 1462 66.17 6e-134 DNA topoisomerase 2 OS Pisum sativum GN TOP2 PE 2 SV 1
blastp_uniprot_sprot sp|P30182|TOP2_ARATH 1 487 + 487 Gaps:18 23.90 1473 74.15 2e-130 DNA topoisomerase 2 OS Arabidopsis thaliana GN TOP2 PE 2 SV 2
blastp_uniprot_sprot sp|P08096|TOP2_SCHPO 1 291 + 291 Gaps:17 18.72 1485 53.24 3e-85 DNA topoisomerase 2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN top2 PE 1 SV 2
blastp_uniprot_sprot sp|O42130|TOP2A_CHICK 1 291 + 291 Gaps:16 17.97 1553 54.12 2e-82 DNA topoisomerase 2-alpha OS Gallus gallus GN TOP2A PE 2 SV 2
blastp_uniprot_sprot sp|P11388|TOP2A_HUMAN 16 291 + 276 Gaps:15 17.31 1531 53.96 3e-82 DNA topoisomerase 2-alpha OS Homo sapiens GN TOP2A PE 1 SV 3
blastp_uniprot_sprot sp|O46374|TOP2A_PIG 16 291 + 276 Gaps:15 17.29 1533 54.34 8e-82 DNA topoisomerase 2-alpha OS Sus scrofa GN TOP2A PE 2 SV 1
blastp_uniprot_sprot sp|Q01320|TOP2A_MOUSE 16 291 + 276 Gaps:15 17.34 1528 54.34 1e-81 DNA topoisomerase 2-alpha OS Mus musculus GN Top2a PE 1 SV 2
blastp_uniprot_sprot sp|O42131|TOP2B_CHICK 1 291 + 291 Gaps:16 17.15 1627 53.05 1e-81 DNA topoisomerase 2-beta OS Gallus gallus GN TOP2B PE 2 SV 1
blastp_uniprot_sprot sp|P41515|TOP2A_CRIGR 16 291 + 276 Gaps:15 17.37 1526 53.58 3e-81 DNA topoisomerase 2-alpha OS Cricetulus griseus GN TOP2A PE 1 SV 1
blastp_uniprot_sprot sp|Q64399|TOP2B_CRILO 14 291 + 278 Gaps:15 16.56 1612 53.18 1e-80 DNA topoisomerase 2-beta OS Cricetulus longicaudatus GN TOP2B PE 2 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 62 204 143 SSF54211 none none IPR020568
PANTHER 1 286 286 PTHR10169 none none none
Pfam 72 205 134 PF00204 none DNA gyrase B IPR013506
Gene3D 3 81 79 G3DSA:3.30.565.10 none none IPR003594
SMART 1 352 352 SM00433 none TopoisomeraseII IPR001241
Gene3D 240 288 49 G3DSA:3.40.50.670 none none IPR013759
SUPERFAMILY 3 69 67 SSF55874 none none IPR003594
SUPERFAMILY 247 288 42 SSF56719 none none IPR013760
ProSitePatterns 274 282 9 PS00177 none DNA topoisomerase II signature. IPR018522
Gene3D 95 205 111 G3DSA:3.30.230.10 none none IPR014721
PANTHER 1 286 286 PTHR10169:SF38 none none none

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting