Protein : Qrob_P0139260.2 Q. robur
Protein Identifier  ? Qrob_P0139260.2 Organism . Name  Quercus robur
Score  90.1 Score Type  egn
Protein Description  (M=1) PF00204//PF00521//PF01751 - DNA gyrase B // DNA gyrase/topoisomerase IV, subunit A // Toprim domain Code Enzyme  EC:5.99.1.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 679  
Kegg Orthology  K03164
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO:0006259 DNA metabolic process Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|brp:103853975 1 591 + 591 Gaps:54 41.15 1412 74.18 0.0 DNA topoisomerase 2
blastp_kegg lcl|pmum:103330635 1 594 + 594 Gaps:52 39.84 1471 75.43 0.0 DNA topoisomerase 2
blastp_kegg lcl|cmo:103500322 1 591 + 591 Gaps:53 39.19 1490 75.51 0.0 DNA topoisomerase 2
blastp_kegg lcl|pper:PRUPE_ppa000202mg 1 594 + 594 Gaps:52 39.84 1471 75.26 0.0 hypothetical protein
blastp_kegg lcl|fve:101308524 1 594 + 594 Gaps:52 39.89 1469 74.91 0.0 DNA topoisomerase 2-like
blastp_kegg lcl|vvi:100253371 1 591 + 591 Gaps:52 39.15 1489 75.13 0.0 DNA topoisomerase 2-like
blastp_kegg lcl|mdm:103409964 1 594 + 594 Gaps:52 40.84 1435 74.57 0.0 DNA topoisomerase 2-like
blastp_kegg lcl|mdm:103438420 1 594 + 594 Gaps:52 40.08 1462 74.57 0.0 DNA topoisomerase 2-like
blastp_kegg lcl|pop:POPTR_0009s06380g 1 594 + 594 Gaps:56 39.68 1482 72.62 0.0 POPTRDRAFT_557797 DNA topoisomerase family protein
blastp_kegg lcl|tcc:TCM_042757 1 591 + 591 Gaps:52 39.58 1473 74.61 0.0 DNA topoisomerase 2 isoform 1
blastp_pdb 3qx3_B 261 591 + 331 Gaps:44 45.45 803 54.79 5e-118 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 3qx3_A 261 591 + 331 Gaps:44 45.45 803 54.79 5e-118 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 1bjt_A 257 593 + 337 Gaps:25 45.40 793 53.61 5e-112 mol:protein length:793 TOPOISOMERASE II
blastp_pdb 1bgw_A 257 593 + 337 Gaps:25 45.40 793 53.61 5e-112 mol:protein length:793 TOPOISOMERASE
blastp_pdb 3l4k_A 273 593 + 321 Gaps:25 45.44 757 54.07 3e-109 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 3l4j_A 273 593 + 321 Gaps:25 45.44 757 54.07 3e-109 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 2rgr_A 273 593 + 321 Gaps:25 45.32 759 53.78 1e-107 mol:protein length:759 DNA topoisomerase 2
blastp_pdb 1zxn_D 16 259 + 244 Gaps:32 53.50 400 48.60 4e-56 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_pdb 1zxn_C 16 259 + 244 Gaps:32 53.50 400 48.60 4e-56 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_pdb 1zxn_B 16 259 + 244 Gaps:32 53.50 400 48.60 4e-56 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_uniprot_sprot sp|P30182|TOP2_ARATH 1 591 + 591 Gaps:57 39.65 1473 70.38 0.0 DNA topoisomerase 2 OS Arabidopsis thaliana GN TOP2 PE 2 SV 2
blastp_uniprot_sprot sp|O24308|TOP2_PEA 1 591 + 591 Gaps:72 38.51 1462 67.67 0.0 DNA topoisomerase 2 OS Pisum sativum GN TOP2 PE 2 SV 1
blastp_uniprot_sprot sp|P08096|TOP2_SCHPO 1 591 + 591 Gaps:55 39.06 1485 51.38 0.0 DNA topoisomerase 2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN top2 PE 1 SV 2
blastp_uniprot_sprot sp|P15348|TOP2_DROME 17 644 + 628 Gaps:88 43.81 1447 50.47 0.0 DNA topoisomerase 2 OS Drosophila melanogaster GN Top2 PE 1 SV 1
blastp_uniprot_sprot sp|O42131|TOP2B_CHICK 1 591 + 591 Gaps:78 36.57 1627 51.93 0.0 DNA topoisomerase 2-beta OS Gallus gallus GN TOP2B PE 2 SV 1
blastp_uniprot_sprot sp|P11388|TOP2A_HUMAN 16 591 + 576 Gaps:69 37.95 1531 51.81 0.0 DNA topoisomerase 2-alpha OS Homo sapiens GN TOP2A PE 1 SV 3
blastp_uniprot_sprot sp|O42130|TOP2A_CHICK 14 591 + 578 Gaps:69 37.54 1553 52.32 0.0 DNA topoisomerase 2-alpha OS Gallus gallus GN TOP2A PE 2 SV 2
blastp_uniprot_sprot sp|Q01320|TOP2A_MOUSE 16 591 + 576 Gaps:69 38.02 1528 51.64 0.0 DNA topoisomerase 2-alpha OS Mus musculus GN Top2a PE 1 SV 2
blastp_uniprot_sprot sp|O46374|TOP2A_PIG 16 591 + 576 Gaps:69 37.90 1533 51.98 0.0 DNA topoisomerase 2-alpha OS Sus scrofa GN TOP2A PE 2 SV 1
blastp_uniprot_sprot sp|P41515|TOP2A_CRIGR 16 591 + 576 Gaps:69 38.07 1526 51.64 0.0 DNA topoisomerase 2-alpha OS Cricetulus griseus GN TOP2A PE 1 SV 1

27 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 492 678 187 SM00434 none DNA Topoisomerase IV IPR002205
Gene3D 397 439 43 G3DSA:3.30.1490.30 none none none
PANTHER 144 591 448 PTHR10169 none none none
PANTHER 1 113 113 PTHR10169:SF38 none none none
Gene3D 143 251 109 G3DSA:3.30.230.10 none none IPR014721
Pfam 142 259 118 PF00204 none DNA gyrase B IPR013506
Pfam 512 592 81 PF00521 none DNA gyrase/topoisomerase IV, subunit A IPR002205
Pfam 290 386 97 PF01751 none Toprim domain IPR006171
SUPERFAMILY 265 592 328 SSF56719 none none IPR013760
SUPERFAMILY 3 68 66 SSF55874 none none IPR003594
PANTHER 144 591 448 PTHR10169:SF38 none none none
ProSitePatterns 292 300 9 PS00177 none DNA topoisomerase II signature. IPR018522
Gene3D 505 592 88 G3DSA:3.90.199.10 none none IPR013758
Gene3D 3 81 79 G3DSA:3.30.565.10 none none IPR003594
SUPERFAMILY 121 250 130 SSF54211 none none IPR020568
PRINTS 288 295 8 PR01158 none Topoisomerase II signature IPR001154
PRINTS 540 563 24 PR01158 none Topoisomerase II signature IPR001154
PRINTS 273 283 11 PR01158 none Topoisomerase II signature IPR001154
PRINTS 371 386 16 PR01158 none Topoisomerase II signature IPR001154
PANTHER 1 113 113 PTHR10169 none none none
PRINTS 352 368 17 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 421 437 17 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 147 160 14 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 370 387 18 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 290 304 15 PR00418 none DNA topoisomerase II family signature IPR001241
SMART 1 481 481 SM00433 none TopoisomeraseII IPR001241
Gene3D 258 391 134 G3DSA:3.40.50.670 none none IPR013759

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting