Protein : Qrob_P0139240.2 Q. robur
Protein Identifier  ? Qrob_P0139240.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=5) K03164 - DNA topoisomerase II [EC:5.99.1.3] Code Enzyme  EC:5.99.1.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 832  
Kegg Orthology  K03164
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.
GO:0006259 DNA metabolic process Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103330635 24 822 + 799 Gaps:169 56.22 1471 60.70 0.0 DNA topoisomerase 2
blastp_kegg lcl|pper:PRUPE_ppa000202mg 24 822 + 799 Gaps:169 56.22 1471 60.34 0.0 hypothetical protein
blastp_kegg lcl|mdm:103438420 24 830 + 807 Gaps:169 56.63 1462 59.30 0.0 DNA topoisomerase 2-like
blastp_kegg lcl|pxb:103945915 24 830 + 807 Gaps:168 56.78 1467 59.06 0.0 DNA topoisomerase 2-like
blastp_kegg lcl|pxb:103945911 24 830 + 807 Gaps:168 56.78 1467 59.06 0.0 DNA topoisomerase 2-like
blastp_kegg lcl|cic:CICLE_v10030505mg 24 816 + 793 Gaps:136 57.39 1455 55.57 0.0 hypothetical protein
blastp_kegg lcl|cit:102610705 24 816 + 793 Gaps:136 57.35 1456 55.57 0.0 DNA topoisomerase 2-like
blastp_kegg lcl|bdi:100839516 23 801 + 779 Gaps:209 57.43 1494 48.95 0.0 DNA topoisomerase 2-like
blastp_kegg lcl|mtr:MTR_3g085840 24 824 + 801 Gaps:155 55.84 1345 53.93 0.0 DNA topoisomerase
blastp_kegg lcl|pop:POPTR_0009s06380g 24 823 + 800 Gaps:106 57.76 1482 51.75 7e-166 POPTRDRAFT_557797 DNA topoisomerase family protein
blastp_pdb 2rgr_A 37 574 + 538 Gaps:67 65.61 759 51.41 1e-69 mol:protein length:759 DNA topoisomerase 2
blastp_pdb 3l4k_A 37 574 + 538 Gaps:67 65.79 757 51.61 1e-69 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 3l4j_A 37 574 + 538 Gaps:67 65.79 757 51.61 1e-69 mol:protein length:757 DNA topoisomerase 2
blastp_pdb 1bjt_A 27 574 + 548 Gaps:75 66.08 793 50.76 1e-69 mol:protein length:793 TOPOISOMERASE II
blastp_pdb 1bgw_A 27 574 + 548 Gaps:75 66.08 793 50.76 1e-69 mol:protein length:793 TOPOISOMERASE
blastp_pdb 3qx3_B 31 571 + 541 Gaps:72 63.64 803 52.64 2e-67 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 3qx3_A 31 571 + 541 Gaps:72 63.64 803 52.64 2e-67 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 3ilw_B 314 577 + 264 Gaps:37 58.94 470 27.08 1e-11 mol:protein length:470 DNA gyrase subunit A
blastp_pdb 3ilw_A 314 577 + 264 Gaps:37 58.94 470 27.08 1e-11 mol:protein length:470 DNA gyrase subunit A
blastp_pdb 3ifz_B 314 577 + 264 Gaps:37 54.53 508 27.08 2e-11 mol:protein length:508 DNA gyrase subunit A
blastp_uniprot_sprot sp|O24308|TOP2_PEA 24 807 + 784 Gaps:159 55.68 1462 55.41 0.0 DNA topoisomerase 2 OS Pisum sativum GN TOP2 PE 2 SV 1
blastp_uniprot_sprot sp|Q01879|TOP2_PICGU 25 571 + 547 Gaps:127 41.14 1400 41.32 5e-122 DNA topoisomerase 2 OS Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN TOP2 PE 3 SV 3
blastp_uniprot_sprot sp|P06786|TOP2_YEAST 27 574 + 548 Gaps:131 40.41 1428 43.15 5e-121 DNA topoisomerase 2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN TOP2 PE 1 SV 2
blastp_uniprot_sprot sp|Q55BP5|TOP2_DICDI 30 571 + 542 Gaps:160 39.84 1521 41.09 7e-121 Probable DNA topoisomerase 2 OS Dictyostelium discoideum GN top2 PE 3 SV 1
blastp_uniprot_sprot sp|P87078|TOP2_CANAX 25 576 + 552 Gaps:127 40.18 1461 41.57 2e-120 DNA topoisomerase 2 OS Candida albicans GN TOP2 PE 3 SV 1
blastp_uniprot_sprot sp|P41515|TOP2A_CRIGR 11 571 + 561 Gaps:144 39.25 1526 42.07 3e-118 DNA topoisomerase 2-alpha OS Cricetulus griseus GN TOP2A PE 1 SV 1
blastp_uniprot_sprot sp|O46374|TOP2A_PIG 11 571 + 561 Gaps:144 39.07 1533 41.74 5e-117 DNA topoisomerase 2-alpha OS Sus scrofa GN TOP2A PE 2 SV 1
blastp_uniprot_sprot sp|P11388|TOP2A_HUMAN 11 571 + 561 Gaps:144 39.12 1531 41.74 7e-117 DNA topoisomerase 2-alpha OS Homo sapiens GN TOP2A PE 1 SV 3
blastp_uniprot_sprot sp|P41516|TOP2A_RAT 11 571 + 561 Gaps:144 39.25 1526 41.57 2e-116 DNA topoisomerase 2-alpha OS Rattus norvegicus GN Top2a PE 2 SV 1
blastp_uniprot_sprot sp|O42131|TOP2B_CHICK 28 571 + 544 Gaps:140 36.02 1627 42.49 2e-116 DNA topoisomerase 2-beta OS Gallus gallus GN TOP2B PE 2 SV 1

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 226 571 346 PTHR10169:SF38 none none none
PANTHER 24 146 123 PTHR10169:SF38 none none none
PANTHER 169 208 40 PTHR10169:SF38 none none none
SUPERFAMILY 37 571 535 SSF56719 none none IPR013760
SMART 274 669 396 SM00434 none DNA Topoisomerase IV IPR002205
Gene3D 309 452 144 G3DSA:3.90.199.10 none none IPR013758
PRINTS 156 172 17 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 60 74 15 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 195 207 13 PR00418 none DNA topoisomerase II family signature IPR001241
PRINTS 174 191 18 PR00418 none DNA topoisomerase II family signature IPR001241
PANTHER 226 571 346 PTHR10169 none none none
PANTHER 169 208 40 PTHR10169 none none none
SMART 2 303 302 SM00433 none TopoisomeraseII IPR001241
PANTHER 24 146 123 PTHR10169 none none none
Pfam 311 572 262 PF00521 none DNA gyrase/topoisomerase IV, subunit A IPR002205
Gene3D 28 246 219 G3DSA:3.40.50.670 none none IPR013759
PRINTS 58 65 8 PR01158 none Topoisomerase II signature IPR001154
PRINTS 375 395 21 PR01158 none Topoisomerase II signature IPR001154
PRINTS 43 53 11 PR01158 none Topoisomerase II signature IPR001154
PRINTS 110 123 14 PR01158 none Topoisomerase II signature IPR001154
PRINTS 298 321 24 PR01158 none Topoisomerase II signature IPR001154
PRINTS 345 367 23 PR01158 none Topoisomerase II signature IPR001154
PRINTS 484 498 15 PR01158 none Topoisomerase II signature IPR001154
ProSitePatterns 62 70 9 PS00177 none DNA topoisomerase II signature. IPR018522
Gene3D 453 559 107 G3DSA:3.30.1360.40 none none IPR024946
Pfam 60 190 131 PF01751 none Toprim domain IPR006171

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting