Protein : Qrob_P0139160.2 Q. robur
Protein Identifier  ? Qrob_P0139160.2 Organism . Name  Quercus robur
Score  7.4 Score Type  egn
Protein Description  (M=1) KOG0355//KOG0472//KOG0532//KOG0618//KOG4658 - DNA topoisomerase type II [Chromatin structure and dynamics]. // Leucine-rich repeat protein [Function unknown]. // Leucine-rich repeat (LRR) protein contains calponin homology domain [Cytoskeleton]. // Serine/threonine phosphatase 2C containing leucine-rich repeats similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]. // Apoptotic ATPase [Signal transduction mechanisms]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 2030  
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0043531 ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity Catalysis of a DNA topological transformation by transiently cleaving a pair of complementary DNA strands to form a gate through which a second double-stranded DNA segment is passed, after which the severed strands in the first DNA segment are rejoined; product release is coupled to ATP binding and hydrolysis; changes the linking number in multiples of 2.
GO:0006265 DNA topological change The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103418634 1 1108 + 1108 Gaps:72 99.56 1133 49.20 0.0 putative disease resistance protein RGA4
blastp_kegg lcl|mdm:103451551 1 1110 + 1110 Gaps:45 100.00 1125 46.49 0.0 disease resistance protein RGA2-like
blastp_kegg lcl|tcc:TCM_011164 1 1108 + 1108 Gaps:127 99.08 1192 45.81 0.0 LRR and NB-ARC domains-containing disease resistance protein putative
blastp_kegg lcl|rcu:RCOM_1292200 1 1117 + 1117 Gaps:52 99.73 1100 48.13 0.0 Disease resistance protein RGA2 putative (EC:3.1.3.16)
blastp_kegg lcl|mdm:103447560 1 1105 + 1105 Gaps:53 99.55 1123 46.96 0.0 disease resistance protein RGA2-like
blastp_kegg lcl|mdm:103432544 1 1107 + 1107 Gaps:58 99.91 1126 46.93 0.0 disease resistance protein RGA2-like
blastp_kegg lcl|cic:CICLE_v10007328mg 1 1108 + 1108 Gaps:117 98.93 1024 49.95 0.0 hypothetical protein
blastp_kegg lcl|cit:102620383 1 1108 + 1108 Gaps:117 98.93 1024 49.95 0.0 putative disease resistance protein RGA3-like
blastp_kegg lcl|mdm:103432546 1 1105 + 1105 Gaps:76 99.82 1087 47.65 0.0 putative disease resistance protein RGA3
blastp_kegg lcl|pop:POPTR_0019s10290g 1 1104 + 1104 Gaps:102 100.00 1186 43.51 0.0 hypothetical protein
blastp_pdb 1zxn_D 1174 1414 + 241 Gaps:59 59.50 400 42.86 3e-44 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_pdb 1zxn_C 1174 1414 + 241 Gaps:59 59.50 400 42.86 3e-44 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_pdb 1zxn_B 1174 1414 + 241 Gaps:59 59.50 400 42.86 3e-44 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_pdb 1zxn_A 1174 1414 + 241 Gaps:59 59.50 400 42.86 3e-44 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_pdb 1zxm_B 1174 1414 + 241 Gaps:59 59.50 400 42.86 3e-44 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_pdb 1zxm_A 1174 1414 + 241 Gaps:59 59.50 400 42.86 3e-44 mol:protein length:400 DNA topoisomerase II alpha isozyme
blastp_pdb 3qx3_B 1416 1754 + 339 Gaps:6 44.96 803 43.21 1e-40 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 3qx3_A 1416 1754 + 339 Gaps:6 44.96 803 43.21 1e-40 mol:protein length:803 DNA topoisomerase 2-beta
blastp_pdb 1bjt_A 1412 1740 + 329 Gaps:25 45.02 793 41.18 1e-31 mol:protein length:793 TOPOISOMERASE II
blastp_pdb 1bgw_A 1412 1740 + 329 Gaps:25 45.02 793 41.18 1e-31 mol:protein length:793 TOPOISOMERASE
blastp_uniprot_sprot sp|Q7XA40|RGA3_SOLBU 1 1107 + 1107 Gaps:155 99.80 992 41.52 1e-171 Putative disease resistance protein RGA3 OS Solanum bulbocastanum GN RGA3 PE 2 SV 2
blastp_uniprot_sprot sp|Q7XA39|RGA4_SOLBU 1 1107 + 1107 Gaps:154 99.90 988 39.51 1e-171 Putative disease resistance protein RGA4 OS Solanum bulbocastanum GN RGA4 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XA42|RGA1_SOLBU 24 1107 + 1084 Gaps:158 97.85 979 40.71 2e-165 Putative disease resistance protein RGA1 OS Solanum bulbocastanum GN RGA1 PE 2 SV 2
blastp_uniprot_sprot sp|Q7XBQ9|RGA2_SOLBU 24 1107 + 1084 Gaps:181 97.84 970 40.67 3e-164 Disease resistance protein RGA2 OS Solanum bulbocastanum GN RGA2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LRR4|R13L1_ARATH 37 1002 + 966 Gaps:84 91.27 1054 33.99 9e-123 Putative disease resistance RPP13-like protein 1 OS Arabidopsis thaliana GN RPPL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LRR5|DRL21_ARATH 37 940 + 904 Gaps:78 63.20 1424 34.00 1e-117 Putative disease resistance protein At3g14460 OS Arabidopsis thaliana GN At3g14460 PE 3 SV 1
blastp_uniprot_sprot sp|O24308|TOP2_PEA 1174 2005 + 832 Gaps:123 60.67 1462 51.75 2e-112 DNA topoisomerase 2 OS Pisum sativum GN TOP2 PE 2 SV 1
blastp_uniprot_sprot sp|P30182|TOP2_ARATH 1174 2013 + 840 Gaps:178 58.52 1473 52.20 2e-103 DNA topoisomerase 2 OS Arabidopsis thaliana GN TOP2 PE 2 SV 2
blastp_uniprot_sprot sp|P08096|TOP2_SCHPO 1174 1924 + 751 Gaps:116 52.26 1485 39.43 7e-76 DNA topoisomerase 2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN top2 PE 1 SV 2
blastp_uniprot_sprot sp|P15348|TOP2_DROME 1177 1744 + 568 Gaps:86 40.77 1447 41.19 4e-74 DNA topoisomerase 2 OS Drosophila melanogaster GN Top2 PE 1 SV 1

40 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 191 206 16 PR00364 none Disease resistance protein signature none
PRINTS 590 606 17 PR00364 none Disease resistance protein signature none
PRINTS 264 278 15 PR00364 none Disease resistance protein signature none
PRINTS 362 376 15 PR00364 none Disease resistance protein signature none
Gene3D 762 898 137 G3DSA:3.80.10.10 none none none
Gene3D 899 1083 185 G3DSA:3.80.10.10 none none none
Coils 1706 1727 22 Coil none none none
SUPERFAMILY 486 688 203 SSF52058 none none none
SUPERFAMILY 1041 1108 68 SSF52058 none none none
SUPERFAMILY 762 912 151 SSF52058 none none none
PANTHER 1 452 452 PTHR23155:SF419 none none none
PANTHER 531 549 19 PTHR23155:SF419 none none none
PANTHER 750 917 168 PTHR23155:SF419 none none none
PANTHER 1016 1085 70 PTHR23155:SF419 none none none
PANTHER 1 452 452 PTHR23155 none none none
PANTHER 750 917 168 PTHR23155 none none none
PANTHER 1016 1085 70 PTHR23155 none none none
SUPERFAMILY 921 1085 165 SSF52058 none none none
Gene3D 1298 1406 109 G3DSA:3.30.230.10 none none IPR014721
Gene3D 1413 1483 71 G3DSA:3.40.50.670 none none IPR013759
SUPERFAMILY 1165 1230 66 SSF55874 none none IPR003594
Gene3D 169 311 143 G3DSA:3.40.50.300 none none IPR027417
SMART 1135 1608 474 SM00433 none TopoisomeraseII IPR001241
SUPERFAMILY 151 421 271 SSF52540 none none IPR027417
PANTHER 580 734 155 PTHR23155 none none none
PANTHER 531 549 19 PTHR23155 none none none
Pfam 1474 1737 264 PF00521 none DNA gyrase/topoisomerase IV, subunit A IPR002205
SMART 1386 1734 349 SM00434 none DNA Topoisomerase IV IPR002205
Pfam 169 448 280 PF00931 none NB-ARC domain IPR002182
Gene3D 567 742 176 G3DSA:3.80.10.10 none none none

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting