Protein : Qrob_P0136300.2 Q. robur
Protein Identifier  ? Qrob_P0136300.2 Organism . Name  Quercus robur
Score  7.1 Score Type  egn
Protein Description  (M=3) PF02892//PF04937//PF05699 - BED zinc finger // Protein of unknown function (DUF 659) // hAT family C-terminal dimerisation region Gene Prediction Quality  validated
Protein length 

Sequence

Length: 422  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

10 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0771690 1 414 + 414 Gaps:4 58.74 698 59.02 4e-79 protein dimerization putative
blastp_kegg lcl|vvi:100264734 1 420 + 420 Gaps:5 59.80 714 55.74 9e-73 uncharacterized LOC100264734
blastp_kegg lcl|pmum:103327467 8 421 + 414 Gaps:26 68.46 707 53.72 2e-71 uncharacterized LOC103327467
blastp_kegg lcl|tcc:TCM_027624 1 419 + 419 Gaps:8 58.82 709 55.88 6e-70 HAT transposon superfamily protein putative
blastp_kegg lcl|mdm:103445133 6 421 + 416 Gaps:12 58.17 698 56.40 3e-67 uncharacterized LOC103445133
blastp_kegg lcl|pxb:103936853 6 421 + 416 Gaps:14 58.05 696 55.94 3e-66 uncharacterized LOC103936853
blastp_kegg lcl|atr:s00025p00224940 12 381 + 370 Gaps:56 86.77 461 36.25 6e-66 AMTR_s00025p00224940 hypothetical protein
blastp_kegg lcl|sot:102589543 8 399 + 392 Gaps:42 57.58 686 49.37 4e-50 uncharacterized LOC102589543
blastp_kegg lcl|sly:101247551 8 399 + 392 Gaps:29 52.75 692 50.96 2e-49 uncharacterized LOC101247551
blastp_kegg lcl|vvi:100251332 11 396 + 386 Gaps:2 54.16 709 47.40 2e-45 uncharacterized LOC100251332

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 240 383 144 PTHR32166:SF11 none none none
Pfam 286 355 70 PF05699 none hAT family C-terminal dimerisation region IPR008906
Pfam 9 43 35 PF02892 none BED zinc finger IPR003656
PANTHER 240 383 144 PTHR32166 none none none
Pfam 201 233 33 PF04937 none Protein of unknown function (DUF 659) IPR007021

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting