Protein : Qrob_P0135310.2 Q. robur
Protein Identifier  ? Qrob_P0135310.2 Organism . Name  Quercus robur
Score  83.4 Score Type  egn
Protein Description  (M=1) K10740 - replication factor A3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 133  
Kegg Orthology  K10740
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO:0006310 DNA recombination Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100244193 27 132 + 106 Gaps:1 100.00 107 71.96 2e-49 uncharacterized LOC100244193
blastp_kegg lcl|pop:POPTR_0010s24570g 27 132 + 106 none 100.00 106 69.81 2e-49 POPTRDRAFT_660157 hypothetical protein
blastp_kegg lcl|gmx:100306197 27 132 + 106 none 100.00 106 72.64 1e-48 uncharacterized LOC100306197
blastp_kegg lcl|gmx:100781484 27 132 + 106 none 100.00 106 70.75 8e-48 replication protein A 14 kDa subunit B-like
blastp_kegg lcl|csv:101229844 27 132 + 106 none 100.00 106 67.92 1e-47 uncharacterized LOC101229844
blastp_kegg lcl|csv:101205315 27 132 + 106 none 100.00 106 67.92 1e-47 uncharacterized LOC101205315
blastp_kegg lcl|vvi:100264936 27 132 + 106 Gaps:1 100.00 107 67.29 3e-47 uncharacterized LOC100264936
blastp_kegg lcl|cit:102619411 27 132 + 106 Gaps:1 100.00 107 67.29 4e-47 replication protein A 14 kDa subunit B-like
blastp_kegg lcl|cmo:103489388 27 132 + 106 none 100.00 106 66.98 6e-47 replication protein A 14 kDa subunit B-like
blastp_kegg lcl|pvu:PHAVU_007G022600g 27 132 + 106 none 100.00 106 66.98 5e-46 hypothetical protein
blastp_uniprot_sprot sp|Q6NLG7|RFA3B_ARATH 27 132 + 106 none 100.00 106 62.26 5e-45 Replication protein A 14 kDa subunit B OS Arabidopsis thaliana GN RPA3B PE 3 SV 1
blastp_uniprot_sprot sp|Q9LXK1|RFA3A_ARATH 27 132 + 106 Gaps:1 100.00 107 64.49 7e-43 Replication protein A 14 kDa subunit A OS Arabidopsis thaliana GN RPA3A PE 2 SV 1
blastp_uniprot_sprot sp|Q9SDK9|RFA3_ORYSJ 27 132 + 106 none 100.00 106 50.00 3e-34 Replication protein A 14 kDa subunit OS Oryza sativa subsp. japonica GN RPA3 PE 1 SV 1
rpsblast_cdd gnl|CDD|117234 27 131 + 105 Gaps:8 100.00 111 36.04 2e-20 pfam08661 Rep_fac-A_3 Replication factor A protein 3. Replication factor A is involved in eukaryotic DNA replication recombination and repair.
rpsblast_cdd gnl|CDD|72951 32 131 + 100 Gaps:3 100.00 101 33.66 7e-18 cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication recombination and repair. RPA also mediates specific interactions of various nuclear proteins. In animals plants and fungi RPA is a heterotrimer with subunits of 70KDa (RPA1) 32kDa (RPA2) and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer..

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 30 131 102 SSF50249 none none IPR012340
PANTHER 27 132 106 PTHR31614 none none none
PANTHER 27 132 106 PTHR31614:SF2 none none none
Gene3D 31 131 101 G3DSA:2.40.50.140 none none IPR012340
Pfam 27 125 99 PF08661 none Replication factor A protein 3 IPR013970

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1

0 Targeting