Protein : Qrob_P0132220.2 Q. robur
Protein Identifier  ? Qrob_P0132220.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=5) K07374 - tubulin alpha Gene Prediction Quality  validated
Protein length 

Sequence

Length: 452  
Kegg Orthology  K07374
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0007017 microtubule-based process Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.
GO:0003924 GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO:0043234 protein complex A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
GO:0051258 protein polymerization The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
GO:0005874 microtubule Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
GO:0005200 structural constituent of cytoskeleton The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|atr:s00033p00112490 1 451 + 451 none 100.00 451 100.00 0.0 AMTR_s00033p00112490 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1584620 1 451 + 451 none 100.00 451 100.00 0.0 tubulin alpha chain putative
blastp_kegg lcl|cit:102609137 1 451 + 451 none 100.00 451 99.56 0.0 tubulin alpha-3 chain-like
blastp_kegg lcl|pda:103705349 1 451 + 451 none 100.00 451 99.56 0.0 tubulin alpha chain
blastp_kegg lcl|mus:103986585 1 451 + 451 none 100.00 451 99.56 0.0 tubulin alpha chain
blastp_kegg lcl|cic:CICLE_v10025588mg 1 451 + 451 none 100.00 451 99.33 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_000885 1 451 + 451 none 90.02 501 99.33 0.0 Tubulin alpha-2 chain
blastp_kegg lcl|pda:103705714 1 451 + 451 none 100.00 451 99.11 0.0 tubulin alpha chain-like
blastp_kegg lcl|fve:101301331 1 451 + 451 none 100.00 451 99.33 0.0 tubulin alpha-3 chain-like
blastp_kegg lcl|pop:POPTR_0002s11250g 1 451 + 451 none 100.00 451 99.11 0.0 POPTRDRAFT_412148 hypothetical protein
blastp_pdb 1z2b_C 1 450 + 450 Gaps:2 100.00 448 85.71 0.0 mol:protein length:448 Tubulin alpha chain
blastp_pdb 1z2b_A 1 450 + 450 Gaps:2 100.00 448 85.71 0.0 mol:protein length:448 Tubulin alpha chain
blastp_pdb 3e22_C 1 439 + 439 none 97.77 449 87.02 0.0 mol:protein length:449 Tubulin alpha-1C chain
blastp_pdb 3e22_A 1 439 + 439 none 97.77 449 87.02 0.0 mol:protein length:449 Tubulin alpha-1C chain
blastp_pdb 3du7_C 1 439 + 439 none 97.77 449 87.02 0.0 mol:protein length:449 Tubulin alpha-1C chain
blastp_pdb 3du7_A 1 439 + 439 none 97.77 449 87.02 0.0 mol:protein length:449 Tubulin alpha-1C chain
blastp_pdb 3ryi_C 1 439 + 439 none 97.34 451 86.33 0.0 mol:protein length:451 Tubulin alpha chain
blastp_pdb 3ryi_A 1 439 + 439 none 97.34 451 86.33 0.0 mol:protein length:451 Tubulin alpha chain
blastp_pdb 3ryh_C 1 439 + 439 none 97.34 451 86.33 0.0 mol:protein length:451 Tubulin alpha chain
blastp_pdb 3ryh_A 1 439 + 439 none 97.34 451 86.33 0.0 mol:protein length:451 Tubulin alpha chain
blastp_uniprot_sprot sp|P33629|TBA_PRUDU 1 451 + 451 Gaps:1 100.00 450 99.56 0.0 Tubulin alpha chain OS Prunus dulcis GN TUBA PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZRR5|TBA3_HORVU 1 451 + 451 none 100.00 451 98.67 0.0 Tubulin alpha-3 chain OS Hordeum vulgare GN TUBA3 PE 1 SV 1
blastp_uniprot_sprot sp|Q6VAG0|TBA2_GOSHI 1 451 + 451 Gaps:1 100.00 450 98.67 0.0 Tubulin alpha-2 chain OS Gossypium hirsutum PE 2 SV 1
blastp_uniprot_sprot sp|Q6VAF9|TBA4_GOSHI 1 451 + 451 Gaps:1 100.00 450 98.67 0.0 Tubulin alpha-4 chain OS Gossypium hirsutum PE 2 SV 1
blastp_uniprot_sprot sp|P14640|TBA1_MAIZE 1 451 + 451 none 100.00 451 98.00 0.0 Tubulin alpha-1 chain OS Zea mays GN TUBA1 PE 3 SV 1
blastp_uniprot_sprot sp|O22347|TBA1_ELEIN 1 451 + 451 none 100.00 451 98.00 0.0 Tubulin alpha-1 chain OS Eleusine indica GN TUBA1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6VAG1|TBA1_GOSHI 1 451 + 451 none 100.00 451 97.78 0.0 Tubulin alpha-1 chain OS Gossypium hirsutum PE 2 SV 1
blastp_uniprot_sprot sp|P33623|TBA1_ANEPH 1 451 + 451 none 100.00 451 98.00 0.0 Tubulin alpha-1 chain OS Anemia phyllitidis GN TUBA1 PE 2 SV 1
blastp_uniprot_sprot sp|P14641|TBA2_MAIZE 1 451 + 451 none 100.00 451 97.56 0.0 Tubulin alpha-2 chain OS Zea mays GN TUBA2 PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZRB7|TBA_WHEAT 1 451 + 451 none 100.00 451 97.56 0.0 Tubulin alpha chain OS Triticum aestivum GN TUBA PE 2 SV 1

35 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 448 448 PTHR11588 none none IPR000217
ProSitePatterns 142 148 7 PS00227 none Tubulin subunits alpha, beta, and gamma signature. IPR017975
PRINTS 45 58 14 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 214 226 13 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 88 101 14 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 347 360 14 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 422 438 17 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 360 379 20 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 18 33 16 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 321 342 22 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 274 289 16 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 161 172 12 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 120 128 9 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 385 401 17 PR01162 none Alpha-tubulin signature IPR002452
PRINTS 148 160 13 PR01162 none Alpha-tubulin signature IPR002452
Pfam 3 225 223 PF00091 none Tubulin/FtsZ family, GTPase domain IPR003008
Gene3D 1 268 268 G3DSA:3.40.50.1440 none none IPR003008
Pfam 263 393 131 PF03953 none Tubulin C-terminal domain IPR018316
SUPERFAMILY 246 436 191 SSF55307 none none IPR008280
PRINTS 153 174 22 PR01161 none Tubulin signature IPR000217
PRINTS 134 152 19 PR01161 none Tubulin signature IPR000217
PRINTS 95 106 12 PR01161 none Tubulin signature IPR000217
PRINTS 380 408 29 PR01161 none Tubulin signature IPR000217
PRINTS 53 72 20 PR01161 none Tubulin signature IPR000217
PRINTS 192 212 21 PR01161 none Tubulin signature IPR000217
PRINTS 178 191 14 PR01161 none Tubulin signature IPR000217
PRINTS 108 132 25 PR01161 none Tubulin signature IPR000217
PRINTS 10 30 21 PR01161 none Tubulin signature IPR000217
SMART 49 246 198 SM00864 none Tubulin/FtsZ family, GTPase domain IPR003008
SMART 248 393 146 SM00865 none Tubulin/FtsZ family, C-terminal domain IPR018316

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting