Protein : Qrob_P0131590.2 Q. robur
Protein Identifier  ? Qrob_P0131590.2 Organism . Name  Quercus robur
Score  55.0 Score Type  egn
Protein Description  (M=3) PTHR15892 - MITOCHONDRIAL RIBOSOMAL PROTEIN L30 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 206  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015934 large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102614536 100 205 + 106 none 99.07 107 81.13 3e-56 uncharacterized LOC102614536
blastp_kegg lcl|cic:CICLE_v10009985mg 100 205 + 106 none 99.07 107 80.19 3e-55 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa012731mg 98 205 + 108 none 68.79 157 79.63 5e-55 hypothetical protein
blastp_kegg lcl|pmum:103329330 100 205 + 106 none 99.07 107 80.19 2e-54 uncharacterized LOC103329330
blastp_kegg lcl|vvi:100261459 100 205 + 106 Gaps:1 99.07 108 81.31 2e-54 50S ribosomal protein L30-like
blastp_kegg lcl|tcc:TCM_030811 100 205 + 106 none 98.15 108 79.25 4e-54 Ribosomal protein L30 family protein isoform 1
blastp_kegg lcl|gmx:100306695 100 203 + 104 none 97.20 107 80.77 8e-54 uncharacterized LOC100306695
blastp_kegg lcl|vvi:100260125 100 205 + 106 Gaps:1 99.07 108 80.37 1e-53 50S ribosomal protein L30-like
blastp_kegg lcl|gmx:100819606 100 203 + 104 none 97.20 107 80.77 2e-53 uncharacterized LOC100819606
blastp_kegg lcl|fve:101304309 100 205 + 106 none 98.15 108 78.30 2e-53 50S ribosomal protein L30-like
blastp_uniprot_sprot sp|Q47J85|RL30_DECAR 117 170 + 54 none 90.00 60 44.44 3e-07 50S ribosomal protein L30 OS Dechloromonas aromatica (strain RCB) GN rpmD PE 3 SV 1
blastp_uniprot_sprot sp|C3PL27|RL30_CORA7 119 170 + 52 none 85.25 61 40.38 2e-06 50S ribosomal protein L30 OS Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN rpmD PE 3 SV 1
blastp_uniprot_sprot sp|A1KB09|RL30_AZOSB 117 170 + 54 none 90.00 60 44.44 2e-06 50S ribosomal protein L30 OS Azoarcus sp. (strain BH72) GN rpmD PE 3 SV 1
blastp_uniprot_sprot sp|P0A0G1|RL30_STAAW 119 172 + 54 none 91.53 59 44.44 2e-06 50S ribosomal protein L30 OS Staphylococcus aureus (strain MW2) GN rpmD PE 3 SV 1
blastp_uniprot_sprot sp|A8Z339|RL30_STAAT 119 172 + 54 none 91.53 59 44.44 2e-06 50S ribosomal protein L30 OS Staphylococcus aureus (strain USA300 / TCH1516) GN rpmD PE 3 SV 1
blastp_uniprot_sprot sp|Q6G789|RL30_STAAS 119 172 + 54 none 91.53 59 44.44 2e-06 50S ribosomal protein L30 OS Staphylococcus aureus (strain MSSA476) GN rpmD PE 3 SV 1
blastp_uniprot_sprot sp|Q6GEK1|RL30_STAAR 119 172 + 54 none 91.53 59 44.44 2e-06 50S ribosomal protein L30 OS Staphylococcus aureus (strain MRSA252) GN rpmD PE 3 SV 1
blastp_uniprot_sprot sp|P0A0G0|RL30_STAAN 119 172 + 54 none 91.53 59 44.44 2e-06 50S ribosomal protein L30 OS Staphylococcus aureus (strain N315) GN rpmD PE 1 SV 1
blastp_uniprot_sprot sp|P0A0F9|RL30_STAAM 119 172 + 54 none 91.53 59 44.44 2e-06 50S ribosomal protein L30 OS Staphylococcus aureus (strain Mu50 / ATCC 700699) GN rpmD PE 3 SV 1
blastp_uniprot_sprot sp|A6QJ74|RL30_STAAE 119 172 + 54 none 91.53 59 44.44 2e-06 50S ribosomal protein L30 OS Staphylococcus aureus (strain Newman) GN rpmD PE 3 SV 1
rpsblast_cdd gnl|CDD|130375 117 170 + 54 none 98.18 55 46.30 3e-12 TIGR01308 rpmD_bact ribosomal protein L30 bacterial/organelle. This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture from bacterial L30 and also from each other and are described by separate models.
rpsblast_cdd gnl|CDD|100100 119 170 + 52 none 96.30 54 48.08 8e-11 cd01658 Ribosomal_L30 Ribosomal protein L30 which is found in eukaryotes and prokaryotes but not in archaea is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea..
rpsblast_cdd gnl|CDD|201157 119 167 + 49 none 94.23 52 46.94 6e-10 pfam00327 Ribosomal_L30 Ribosomal protein L30p/L7e. This family includes prokaryotic L30 and eukaryotic L7.
rpsblast_cdd gnl|CDD|100098 119 170 + 52 none 98.11 53 48.08 4e-09 cd00355 Ribosomal_L30_like Ribosomal protein L30 which is found in eukaryotes and prokaryotes but not in archaea is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea..
rpsblast_cdd gnl|CDD|180163 119 170 + 52 none 88.14 59 46.15 9e-09 PRK05611 rpmD 50S ribosomal protein L30 Reviewed.
rpsblast_cdd gnl|CDD|32026 117 171 + 55 none 100.00 55 45.45 1e-08 COG1841 RpmD Ribosomal protein L30/L7E [Translation ribosomal structure and biogenesis].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 111 198 88 PTHR15892 none none none
SUPERFAMILY 117 170 54 SSF55129 none none IPR016082
Hamap 114 171 58 MF_01371_B none 50S ribosomal protein L30 [rpmD]. IPR005996
Pfam 118 167 50 PF00327 none Ribosomal protein L30p/L7e IPR016082
TIGRFAM 117 170 54 TIGR01308 none rpmD_bact: ribosomal protein uL30 IPR005996
Gene3D 116 170 55 G3DSA:3.30.1390.20 none none IPR016082

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 56   Mitochondrion 3 0.029 0.792 NON-PLANT 56