Protein : Qrob_P0120700.2 Q. robur
Protein Identifier  ? Qrob_P0120700.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR13215 - RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR Gene Prediction Quality  validated
Protein length 

Sequence

Length: 159  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003713 transcription coactivator activity Interacting selectively and non-covalently with a activating transcription factor and also with the basal transcription machinery in order to increase the frequency, rate or extent of transcription. Cofactors generally do not bind the template nucleic acid, but rather mediate protein-protein interactions between activating transcription factors and the basal transcription machinery.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103424977 1 158 + 158 Gaps:3 100.00 161 71.43 2e-77 RNA polymerase II transcriptional coactivator KELP-like
blastp_kegg lcl|pxb:103949252 1 158 + 158 Gaps:3 100.00 161 70.81 3e-77 RNA polymerase II transcriptional coactivator KELP-like
blastp_kegg lcl|pxb:103933903 1 158 + 158 Gaps:3 100.00 161 70.81 1e-76 RNA polymerase II transcriptional coactivator KELP-like
blastp_kegg lcl|mdm:103404616 1 158 + 158 Gaps:3 100.00 161 70.19 9e-76 RNA polymerase II transcriptional coactivator KELP
blastp_kegg lcl|cmo:103493081 1 158 + 158 Gaps:1 99.37 158 68.15 1e-70 RNA polymerase II transcriptional coactivator KELP
blastp_kegg lcl|fve:101295417 1 158 + 158 none 99.37 159 67.09 5e-69 RNA polymerase II transcriptional coactivator KELP-like
blastp_kegg lcl|csv:101208418 1 158 + 158 Gaps:1 99.37 158 66.88 6e-69 RNA polymerase II transcriptional coactivator KELP-like
blastp_kegg lcl|gmx:100499671 2 156 + 155 Gaps:5 98.16 163 69.38 2e-67 uncharacterized LOC100499671
blastp_kegg lcl|pmum:103337758 1 158 + 158 Gaps:6 100.00 164 68.29 4e-67 RNA polymerase II transcriptional coactivator KELP
blastp_kegg lcl|gmx:100305633 2 156 + 155 Gaps:8 98.19 166 67.48 1e-66 uncharacterized LOC100305633
blastp_pdb 2phe_B 91 154 + 64 Gaps:1 98.48 66 41.54 4e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_pdb 2phe_A 91 154 + 64 Gaps:1 98.48 66 41.54 4e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_pdb 2c62_B 91 154 + 64 Gaps:1 98.48 66 41.54 4e-11 mol:protein length:66 ACTIVATED RNA POLYMERASE II TRANSCRIPTIONAL C
blastp_pdb 2c62_A 91 154 + 64 Gaps:1 98.48 66 41.54 4e-11 mol:protein length:66 ACTIVATED RNA POLYMERASE II TRANSCRIPTIONAL C
blastp_pdb 1pcf_H 91 154 + 64 Gaps:1 98.48 66 41.54 4e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_pdb 1pcf_G 91 154 + 64 Gaps:1 98.48 66 41.54 4e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_pdb 1pcf_F 91 154 + 64 Gaps:1 98.48 66 41.54 4e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_pdb 1pcf_E 91 154 + 64 Gaps:1 98.48 66 41.54 4e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_pdb 1pcf_D 91 154 + 64 Gaps:1 98.48 66 41.54 4e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_pdb 1pcf_C 91 154 + 64 Gaps:1 98.48 66 41.54 4e-11 mol:protein length:66 TRANSCRIPTIONAL COACTIVATOR PC4
blastp_uniprot_sprot sp|O65155|KELP_ARATH 13 158 + 146 Gaps:7 92.73 165 63.40 1e-61 RNA polymerase II transcriptional coactivator KELP OS Arabidopsis thaliana GN KELP PE 1 SV 1
blastp_uniprot_sprot sp|O65154|KIWI_ARATH 88 154 + 67 none 62.62 107 43.28 4e-17 RNA polymerase II transcriptional coactivator KIWI OS Arabidopsis thaliana GN KIWI PE 1 SV 1
blastp_uniprot_sprot sp|Q9FHX8|MDA3_ARATH 1 61 + 61 none 66.30 92 49.18 2e-11 Mediator-associated protein 3 OS Arabidopsis thaliana GN At5g42060 PE 1 SV 1
blastp_uniprot_sprot sp|Q5R6D0|TCP4_PONAB 91 154 + 64 Gaps:1 51.18 127 41.54 3e-10 Activated RNA polymerase II transcriptional coactivator p15 OS Pongo abelii GN SUB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q4R947|TCP4_MACFA 91 154 + 64 Gaps:1 51.18 127 41.54 3e-10 Activated RNA polymerase II transcriptional coactivator p15 OS Macaca fascicularis GN SUB1 PE 2 SV 1
blastp_uniprot_sprot sp|P53999|TCP4_HUMAN 91 154 + 64 Gaps:1 51.18 127 41.54 3e-10 Activated RNA polymerase II transcriptional coactivator p15 OS Homo sapiens GN SUB1 PE 1 SV 3
blastp_uniprot_sprot sp|Q5ZK63|TCP4_CHICK 91 154 + 64 Gaps:1 51.59 126 40.00 4e-10 Activated RNA polymerase II transcriptional coactivator p15 OS Gallus gallus GN SUB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q63396|TCP4_RAT 91 154 + 64 Gaps:1 51.18 127 41.54 5e-10 Activated RNA polymerase II transcriptional coactivator p15 OS Rattus norvegicus GN Sub1 PE 2 SV 3
blastp_uniprot_sprot sp|P11031|TCP4_MOUSE 91 154 + 64 Gaps:1 51.18 127 41.54 5e-10 Activated RNA polymerase II transcriptional coactivator p15 OS Mus musculus GN Sub1 PE 1 SV 3
blastp_uniprot_sprot sp|Q94045|TCP4_CAEEL 60 149 + 90 Gaps:7 73.39 124 40.66 2e-09 Putative RNA polymerase II transcriptional coactivator OS Caenorhabditis elegans GN T13F2.2 PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 6 62 57 G3DSA:1.10.10.60 none none IPR009057
PANTHER 2 154 153 PTHR13215 none none none
Gene3D 91 153 63 G3DSA:2.30.31.10 none none IPR009044
Coils 55 80 26 Coil none none none
SUPERFAMILY 6 60 55 SSF109715 none none none
Pfam 90 144 55 PF02229 none Transcriptional Coactivator p15 (PC4) IPR003173
Pfam 6 60 55 PF08766 none DEK C terminal domain IPR014876
PANTHER 2 154 153 PTHR13215:SF4 none none IPR017415
PIRSF 1 158 158 PIRSF038156 none none IPR017415
SUPERFAMILY 91 153 63 SSF54447 none none IPR009044

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting