Protein : Qrob_P0120440.2 Q. robur
Protein Identifier  ? Qrob_P0120440.2 Organism . Name  Quercus robur
Score  95.0 Score Type  egn
Protein Description  (M=3) 1.2.4.2 - Oxoglutarate dehydrogenase (succinyl-transferring). Code Enzyme  EC:1.2.4.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 600  
Kegg Orthology  K00164
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0030976 thiamine pyrophosphate binding Interacting selectively and non-covalently with thiamine pyrophosphate, the diphosphoric ester of thiamine. Acts as a coenzyme of several (de)carboxylases, transketolases, and alpha-oxoacid dehydrogenases.
GO:0006099 tricarboxylic acid cycle A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide.
GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity Catalysis of the reaction: 2-oxoglutarate + lipoamide = S-succinyldihydrolipoamide + CO2.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0010s21610g 1 593 + 593 none 58.08 1021 93.25 0.0 POPTRDRAFT_724772 2-oxoglutarate dehydrogenase E1 component family protein
blastp_kegg lcl|rcu:RCOM_0465620 1 593 + 593 none 58.08 1021 93.09 0.0 2-oxoglutarate dehydrogenase putative (EC:1.2.4.2)
blastp_kegg lcl|cit:102623642 1 593 + 593 none 57.91 1024 92.58 0.0 2-oxoglutarate dehydrogenase mitochondrial-like
blastp_kegg lcl|cmo:103500204 1 593 + 593 Gaps:1 58.12 1022 92.42 0.0 2-oxoglutarate dehydrogenase mitochondrial-like
blastp_kegg lcl|pop:POPTR_0008s05150g 1 593 + 593 none 58.08 1021 92.58 0.0 POPTRDRAFT_820318 2-oxoglutarate dehydrogenase E1 component family protein
blastp_kegg lcl|csv:101222022 1 593 + 593 Gaps:1 58.12 1022 92.26 0.0 2-oxoglutarate dehydrogenase mitochondrial-like
blastp_kegg lcl|cic:CICLE_v10018656mg 1 593 + 593 none 57.91 1024 91.91 0.0 hypothetical protein
blastp_kegg lcl|pmum:103332610 1 593 + 593 none 58.08 1021 92.58 0.0 2-oxoglutarate dehydrogenase mitochondrial-like
blastp_kegg lcl|pper:PRUPE_ppa000728mg 1 593 + 593 none 58.08 1021 92.58 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_042828 1 593 + 593 none 57.97 1023 92.24 0.0 2-oxoglutarate dehydrogenase E1 component isoform 1
blastp_pdb 2jgd_B 62 549 + 488 Gaps:38 53.38 933 42.57 4e-123 mol:protein length:933 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT
blastp_pdb 2jgd_A 62 549 + 488 Gaps:38 53.38 933 42.57 6e-123 mol:protein length:933 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT
blastp_pdb 2yid_D 112 557 + 446 Gaps:35 51.50 868 48.32 8e-118 mol:protein length:868 2-OXOGLUTARATE DECARBOXYLASE
blastp_pdb 2yid_C 112 557 + 446 Gaps:35 51.50 868 48.32 8e-118 mol:protein length:868 2-OXOGLUTARATE DECARBOXYLASE
blastp_pdb 2yid_B 112 557 + 446 Gaps:35 51.50 868 48.32 8e-118 mol:protein length:868 2-OXOGLUTARATE DECARBOXYLASE
blastp_pdb 2yid_A 112 557 + 446 Gaps:35 51.50 868 48.32 8e-118 mol:protein length:868 2-OXOGLUTARATE DECARBOXYLASE
blastp_pdb 2yic_D 112 557 + 446 Gaps:35 51.50 868 48.32 8e-118 mol:protein length:868 2-OXOGLUTARATE DECARBOXYLASE
blastp_pdb 2yic_C 112 557 + 446 Gaps:35 51.50 868 48.32 8e-118 mol:protein length:868 2-OXOGLUTARATE DECARBOXYLASE
blastp_pdb 2yic_B 112 557 + 446 Gaps:35 51.50 868 48.32 8e-118 mol:protein length:868 2-OXOGLUTARATE DECARBOXYLASE
blastp_pdb 2yic_A 112 557 + 446 Gaps:35 51.50 868 48.32 8e-118 mol:protein length:868 2-OXOGLUTARATE DECARBOXYLASE
blastp_uniprot_sprot sp|Q54JE4|ODO1_DICDI 35 593 + 559 Gaps:25 57.26 1013 53.28 0.0 2-oxoglutarate dehydrogenase mitochondrial OS Dictyostelium discoideum GN ogdh PE 3 SV 1
blastp_uniprot_sprot sp|O74378|ODO1_SCHPO 63 586 + 524 Gaps:35 54.21 1009 51.92 0.0 2-oxoglutarate dehydrogenase mitochondrial OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN kgd1 PE 3 SV 1
blastp_uniprot_sprot sp|P20967|ODO1_YEAST 63 587 + 525 Gaps:40 54.54 1014 48.28 0.0 2-oxoglutarate dehydrogenase mitochondrial OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN KGD1 PE 1 SV 2
blastp_uniprot_sprot sp|O61199|ODO1_CAEEL 64 595 + 532 Gaps:51 54.71 1029 48.31 3e-173 2-oxoglutarate dehydrogenase mitochondrial OS Caenorhabditis elegans GN ogdh-1 PE 1 SV 2
blastp_uniprot_sprot sp|Q68EW0|OGDHL_XENLA 64 580 + 517 Gaps:45 53.63 1018 49.45 2e-172 2-oxoglutarate dehydrogenase-like mitochondrial OS Xenopus laevis GN ogdhl PE 2 SV 1
blastp_uniprot_sprot sp|Q02218|ODO1_HUMAN 26 580 + 555 Gaps:60 56.40 1023 48.53 8e-172 2-oxoglutarate dehydrogenase mitochondrial OS Homo sapiens GN OGDH PE 1 SV 3
blastp_uniprot_sprot sp|Q60HE2|ODO1_MACFA 26 580 + 555 Gaps:60 56.40 1023 48.53 9e-172 2-oxoglutarate dehydrogenase mitochondrial OS Macaca fascicularis GN OGDH PE 2 SV 1
blastp_uniprot_sprot sp|Q5RCB8|ODO1_PONAB 26 580 + 555 Gaps:60 56.40 1023 48.53 9e-172 2-oxoglutarate dehydrogenase mitochondrial OS Pongo abelii GN OGDH PE 2 SV 1
blastp_uniprot_sprot sp|Q623T0|ODO1_CAEBR 64 595 + 532 Gaps:48 54.53 1027 48.39 2e-171 2-oxoglutarate dehydrogenase mitochondrial OS Caenorhabditis briggsae GN CBG01737 PE 3 SV 1
blastp_uniprot_sprot sp|Q148N0|ODO1_BOVIN 26 580 + 555 Gaps:60 56.40 1023 48.70 2e-171 2-oxoglutarate dehydrogenase mitochondrial OS Bos taurus GN OGDH PE 2 SV 1

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 244 564 321 PF00676 none Dehydrogenase E1 component IPR001017
PANTHER 18 593 576 PTHR23152 "KEGG:00020+1.2.4.2","KEGG:00310+1.2.4.2","KEGG:00380+1.2.4.2","MetaCyc:PWY-5084";signature_desc=2-OXOGLUTARATE DEHYDROGENASE none IPR011603
SUPERFAMILY 152 581 430 SSF52518 none none IPR029061
PANTHER 18 593 576 PTHR23152:SF6 none none none
Gene3D 197 586 390 G3DSA:3.40.50.970 none none IPR029061

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 46   Mitochondrion 2 0.022 0.909 NON-PLANT 46