Protein : Qrob_P0108310.2 Q. robur
Protein Identifier  ? Qrob_P0108310.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=8) K11252 - histone H2B Gene Prediction Quality  validated
Protein length 

Sequence

Length: 149  
Kegg Orthology  K11252
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0000786 nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO:0046982 protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100258812 1 148 + 148 none 100.00 148 97.97 3e-96 probable histone H2B.1-like
blastp_kegg lcl|tcc:TCM_041892 1 148 + 148 none 100.00 148 97.97 5e-96 Histone superfamily protein
blastp_kegg lcl|pmum:103322972 1 148 + 148 none 100.00 148 97.30 2e-95 probable histone H2B.1
blastp_kegg lcl|pmum:103322902 1 148 + 148 none 100.00 148 97.30 2e-95 probable histone H2B.1
blastp_kegg lcl|pmum:103322874 1 148 + 148 none 100.00 148 97.30 2e-95 probable histone H2B.1
blastp_kegg lcl|pper:PRUPE_ppa012954mg 1 148 + 148 none 100.00 148 97.30 2e-95 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa012932mg 1 148 + 148 none 100.00 148 97.30 2e-95 hypothetical protein
blastp_kegg lcl|pxb:103930716 1 148 + 148 none 100.00 148 96.62 1e-94 probable histone H2B.1
blastp_kegg lcl|pxb:103948976 1 148 + 148 none 100.00 148 96.62 1e-94 probable histone H2B.1
blastp_kegg lcl|pxb:103948966 1 148 + 148 none 100.00 148 96.62 1e-94 probable histone H2B.1
blastp_pdb 3c9k_F 23 148 + 126 Gaps:5 96.80 125 74.38 2e-55 mol:protein length:125 Histone H2B 7
blastp_pdb 3c9k_B 23 148 + 126 Gaps:5 96.80 125 74.38 2e-55 mol:protein length:125 Histone H2B 7
blastp_pdb 3azn_H 23 148 + 126 Gaps:9 93.80 129 75.21 2e-53 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azn_D 23 148 + 126 Gaps:9 93.80 129 75.21 2e-53 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azm_H 23 148 + 126 Gaps:9 93.80 129 75.21 2e-53 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azm_D 23 148 + 126 Gaps:9 93.80 129 75.21 2e-53 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azl_H 23 148 + 126 Gaps:9 93.80 129 75.21 2e-53 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azl_D 23 148 + 126 Gaps:9 93.80 129 75.21 2e-53 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azk_H 23 148 + 126 Gaps:9 93.80 129 75.21 2e-53 mol:protein length:129 Histone H2B type 1-J
blastp_pdb 3azk_D 23 148 + 126 Gaps:9 93.80 129 75.21 2e-53 mol:protein length:129 Histone H2B type 1-J
blastp_uniprot_sprot sp|O22582|H2B_GOSHI 1 148 + 148 Gaps:1 100.00 147 98.64 7e-96 Histone H2B OS Gossypium hirsutum GN HIS2B PE 2 SV 3
blastp_uniprot_sprot sp|Q1S9I9|H2B1_MEDTR 1 148 + 148 none 100.00 148 95.95 7e-90 Probable histone H2B.1 OS Medicago truncatula PE 1 SV 3
blastp_uniprot_sprot sp|Q1SWQ1|H2B2_MEDTR 1 148 + 148 none 100.00 148 94.59 2e-88 Probable histone H2B.2 OS Medicago truncatula PE 3 SV 3
blastp_uniprot_sprot sp|P93354|H2B_TOBAC 1 148 + 148 Gaps:2 100.00 146 86.99 9e-83 Histone H2B OS Nicotiana tabacum GN HIS2B PE 2 SV 3
blastp_uniprot_sprot sp|O23629|H2B6_ARATH 1 148 + 148 Gaps:4 100.00 150 90.00 6e-82 Histone H2B.6 OS Arabidopsis thaliana GN H2B PE 1 SV 3
blastp_uniprot_sprot sp|Q9SI96|H2B3_ARATH 1 148 + 148 Gaps:3 100.00 151 88.74 1e-79 Histone H2B.3 OS Arabidopsis thaliana GN At2g28720 PE 1 SV 3
blastp_uniprot_sprot sp|O65819|H2B3_SOLLC 8 148 + 141 Gaps:4 100.00 137 95.62 1e-78 Histone H2B.3 (Fragment) OS Solanum lycopersicum GN H2B-3 PE 2 SV 1
blastp_uniprot_sprot sp|O65821|H2B1_SOLLC 1 148 + 148 Gaps:6 100.00 142 91.55 2e-77 Histone H2B.1 OS Solanum lycopersicum GN H2B-1 PE 2 SV 4
blastp_uniprot_sprot sp|O49118|H2B_CAPAN 1 148 + 148 Gaps:7 100.00 145 91.03 4e-77 Histone H2B OS Capsicum annuum GN HIS2B PE 2 SV 3
blastp_uniprot_sprot sp|Q9LQQ4|H2B1_ARATH 1 148 + 148 Gaps:12 100.00 148 90.54 6e-77 Histone H2B.1 OS Arabidopsis thaliana GN At1g07790 PE 1 SV 3

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 2 148 147 PTHR23428 none none IPR000558
SUPERFAMILY 32 148 117 SSF47113 none none IPR009072
Pfam 57 124 68 PF00125 none Core histone H2A/H2B/H3/H4 IPR007125
ProSitePatterns 116 138 23 PS00357 none Histone H2B signature. IPR000558
Gene3D 28 148 121 G3DSA:1.10.20.10 none none IPR009072
PRINTS 61 79 19 PR00621 none Histone H2B signature IPR000558
PRINTS 132 145 14 PR00621 none Histone H2B signature IPR000558
PRINTS 102 119 18 PR00621 none Histone H2B signature IPR000558
PRINTS 119 132 14 PR00621 none Histone H2B signature IPR000558
PRINTS 80 100 21 PR00621 none Histone H2B signature IPR000558
SMART 51 147 97 SM00427 none Histone H2B IPR000558

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting