Protein : Qrob_P0108200.2 Q. robur
Protein Identifier  ? Qrob_P0108200.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=7) PTHR12565:SF77 - TRANSCRIPTION FACTOR AIG1-RELATED (PTHR12565:SF77) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 274  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101310012 17 268 + 252 Gaps:9 69.15 363 66.93 2e-99 transcription factor bHLH30-like
blastp_kegg lcl|pxb:103940198 1 273 + 273 Gaps:25 100.00 266 65.41 2e-97 transcription factor bHLH30-like
blastp_kegg lcl|pmum:103324936 25 268 + 244 Gaps:8 92.83 265 66.26 3e-93 transcription factor bHLH30-like
blastp_kegg lcl|pper:PRUPE_ppa021837mg 48 268 + 221 Gaps:7 83.77 265 69.37 3e-92 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s05490g 26 267 + 242 Gaps:7 92.05 264 63.79 4e-92 POPTRDRAFT_555688 POPTRDRAFT_555689 hypothetical protein
blastp_kegg lcl|gmx:100804756 13 272 + 260 Gaps:9 96.34 273 60.46 3e-91 transcription factor bHLH30-like
blastp_kegg lcl|rcu:RCOM_1014730 50 273 + 224 Gaps:8 99.56 227 68.58 9e-91 DNA binding protein putative
blastp_kegg lcl|mdm:103434868 13 273 + 261 Gaps:16 98.87 266 62.74 9e-89 transcription factor bHLH30-like
blastp_kegg lcl|mdm:103446328 1 273 + 273 Gaps:23 100.00 268 62.69 1e-88 transcription factor bHLH30-like
blastp_kegg lcl|pxb:103944104 31 273 + 243 Gaps:13 92.54 268 64.52 6e-87 transcription factor bHLH30-like
blastp_uniprot_sprot sp|Q9LET0|BH107_ARATH 75 245 + 171 Gaps:9 73.04 230 41.67 4e-33 Putative transcription factor bHLH107 OS Arabidopsis thaliana GN BHLH107 PE 2 SV 1
blastp_uniprot_sprot sp|Q9S7Y1|BH030_ARATH 39 268 + 230 Gaps:21 64.40 368 39.66 5e-30 Transcription factor bHLH30 OS Arabidopsis thaliana GN BHLH30 PE 1 SV 1
blastp_uniprot_sprot sp|O80674|BH106_ARATH 75 243 + 169 Gaps:6 66.01 253 41.92 3e-28 Transcription factor bHLH106 OS Arabidopsis thaliana GN BHLH106 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XEF0|BH051_ARATH 74 211 + 138 Gaps:5 54.72 254 41.73 1e-27 Transcription factor bHLH51 OS Arabidopsis thaliana GN BHLH51 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LS08|BH032_ARATH 43 241 + 199 Gaps:30 60.17 344 38.16 4e-26 Transcription factor AIG1 OS Arabidopsis thaliana GN BHLH32 PE 1 SV 1
blastp_uniprot_sprot sp|P0CB25|BH131_ARATH 73 218 + 146 Gaps:10 53.12 256 37.50 7e-17 Transcription factor bHLH131 OS Arabidopsis thaliana GN BHLH131 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LNJ5|BH013_ARATH 69 245 + 177 Gaps:21 29.49 590 33.33 3e-11 Transcription factor bHLH13 OS Arabidopsis thaliana GN BHLH13 PE 2 SV 1
blastp_uniprot_sprot sp|Q39204|MYC2_ARATH 64 154 + 91 Gaps:1 14.77 623 41.30 4e-11 Transcription factor MYC2 OS Arabidopsis thaliana GN MYC2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FT81|TT8_ARATH 86 193 + 108 Gaps:9 21.43 518 36.94 1e-09 Transcription factor TT8 OS Arabidopsis thaliana GN TT8 PE 1 SV 2
blastp_uniprot_sprot sp|Q9ZPY8|AIB_ARATH 69 211 + 143 Gaps:9 26.15 566 33.11 5e-09 Transcription factor ABA-INDUCIBLE bHLH-TYPE OS Arabidopsis thaliana GN AIB PE 2 SV 2
rpsblast_cdd gnl|CDD|200925 85 132 + 48 Gaps:2 96.15 52 42.00 1e-07 pfam00010 HLH Helix-loop-helix DNA-binding domain.
rpsblast_cdd gnl|CDD|28964 85 133 + 49 Gaps:3 86.67 60 38.46 7e-07 cd00083 HLH Helix-loop-helix domain found in specific DNA- binding proteins that act as transcription factors 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region HLH forms homo- and heterodimers dimerization creates a parallel left-handed four helix bundle the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3) those lacking the basic domain (Emc Id) function as negative regulators since they fail to bind DNA those (hairy E(spl) deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3) those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins the binding of small molecules (e.g. dioxin) and interactions with non-PAS proteins..

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 75 240 166 PTHR12565:SF77 none none none
SMART 88 137 50 SM00353 none helix loop helix domain IPR011598
SUPERFAMILY 85 134 50 SSF47459 none none IPR011598
Coils 180 201 22 Coil none none none
Gene3D 86 133 48 G3DSA:4.10.280.10 none none IPR011598
Pfam 85 131 47 PF00010 none Helix-loop-helix DNA-binding domain IPR011598
ProSiteProfiles 82 131 50 PS50888 none Myc-type, basic helix-loop-helix (bHLH) domain profile. IPR011598
Gene3D 169 236 68 G3DSA:3.30.70.260 none none none
PANTHER 75 240 166 PTHR12565 none none none

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting