| Analysis | rpsblast_cdd | Start | 85 |
| End | 133 | Strand | + |
| Length | 49 | Note | Gaps:3 |
| Hit Coverage | 86.67 | Hit Length | 60 |
| Hit Pident | 38.46 | E Val | 7e-07 |
| Hit Description | cd00083 HLH Helix-loop-helix domain found in specific DNA- binding proteins that act as transcription factors 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region HLH forms homo- and heterodimers dimerization creates a parallel left-handed four helix bundle the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3) those lacking the basic domain (Emc Id) function as negative regulators since they fail to bind DNA those (hairy E(spl) deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3) those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins the binding of small molecules (e.g. dioxin) and interactions with non-PAS proteins.. | Hit Pcons | 21.15 |
| Name | Qrob_P0108200.2 |
| Protein Identifier |
Organism . Name |
Score | Score Type | Protein Description | Alias (in v1) | Code Enzyme | Gene Prediction Quality |
|---|---|---|---|---|---|---|---|
| Qrob_P0108200.2 | Quercus robur | 100.0 | egn | (M=7) PTHR12565:SF77 - TRANSCRIPTION FACTOR AIG1-RELATED (PTHR12565:SF77) | validated |
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